Laur023149.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Limnephilus auricula
Gene Symbol
znf219
Assembly
GCA_951813805.1
Location
OX638412.1:12216784-12229802[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 6.5e-05 0.0039 18.2 5.6 1 23 15 37 15 37 0.99
2 19 2e-05 0.0012 19.8 3.4 1 23 43 65 43 65 0.99
3 19 5.1e-05 0.003 18.5 0.4 1 23 71 93 71 93 0.99
4 19 0.0071 0.42 11.8 2.0 3 23 101 122 99 122 0.95
5 19 0.00018 0.01 16.9 0.7 1 23 142 164 142 164 0.98
6 19 1.6e-06 9.5e-05 23.3 1.8 1 23 170 192 170 192 0.99
7 19 0.032 1.9 9.7 2.2 1 23 198 220 198 220 0.97
8 19 0.0017 0.099 13.8 0.7 1 23 227 249 227 249 0.99
9 19 3.4e-06 0.0002 22.2 0.2 1 23 255 277 255 277 0.99
10 19 0.0025 0.15 13.2 3.8 1 23 283 305 283 305 0.98
11 19 4.7e-07 2.8e-05 24.9 0.6 1 23 311 333 311 333 0.98
12 19 0.00014 0.0084 17.1 6.7 1 23 339 361 339 361 0.99
13 19 2.9e-05 0.0017 19.3 2.8 1 23 463 485 463 485 0.98
14 19 5.8e-07 3.4e-05 24.7 0.2 1 23 491 513 491 513 0.97
15 19 2.3e-07 1.3e-05 25.9 5.6 1 23 519 541 519 541 0.99
16 19 0.0025 0.15 13.2 5.3 1 23 547 569 547 569 0.98
17 19 6.6e-09 3.9e-07 30.8 0.8 1 23 575 597 575 597 0.99
18 19 1.3e-05 0.00079 20.4 1.3 1 23 603 625 603 625 0.98
19 19 0.00027 0.016 16.3 1.3 1 23 644 668 644 668 0.94

Sequence Information

Coding Sequence
ATGGATAGAAATACTGCAATAGATGACCTGATCATTAAGCCATTTAAGTGTGAGTTCTGCCCCAAGAGTTTCAAACTGAACTGCACTCTGAAGACTCATCTCCGGACCCATACGGGCGAGAAACCCTTCCAGTGTGATGTATGCCTCAAAAAGTTCACACAGTCGGGACACCTAAAGGAACATTCCAGAACTCATACAGGTGAGAAGCCGTACCAATGCGCCGAATGCGGAAACTCCTACGTGAATGGGTCACATCTGCGTGCCCACGCACGTTCCCACAGCCGGGAGCGCCCCCACTTGTGCCCCCAGTGCCCCGCCACCTTCGCGCATCTGCACGCCCTCAAGGGACACCTCGCTACCAAGCACGGGAGGCCCGCATACCGATCCTATgttcCTCCAGAGCGCAAGAATGGCGTGAAAAAGTTTGTCTGTGTGGTTTGTGGTTCTGCTTTCCGCCTCAGTCACTCCCTCAAGGTCCATTTGAGGAGTCACTCCGGAGACAGGCCTTACAAGTGTGAACTCTGCGCTAAAGCATTCACCCAGGCGTCCCACCTGCAGTCCCACCAGTCCACGCACTCCAGCTCGGGTGCGCACACATGCTCCGTGTGTGGGCGGCGGTGCGGCAGTGCGCTGCTGGCACGGCGCCACGTACGCTCCCACGCACCGCACCACCGCACTTATCGCTGCAGCGCCTGCGGAGAGAGCTTCCAGAAGCTGGCCAGGCTGAAGACACACGCACGAAGGCATACAGGGGAGAAGGCCTATAAGTGCGGAGTGTGCAGTCGTAGCTTCAGTCTGCCAGCACTACTTGTCTCCCACATGAGGACCCACAGCGGTGAGAAGCCCTTCCAGTGTGAGGTCTGCTCCAAGTGCTTCGCCCAAAGGTCCGTGTTGGCCTGTCACCTGAGAATGCACGCAGGAGACAAGCGCTACGTCTGCGACATCTGCACCAAGAAGTTCATCAGCCAATCGGACCTGGTCAAGCATCGCAGAATCCACACAGGCGAGAAACCGTACAAGTGCGAATTCTGCAACTCCTGCTTTGGACGGAGTAACCACCTCACCAGACACATGAAAATCCACTTCCGCAGCAAGAAAACACAAGATACAAACACTTTGAACAATCGAGAATGCAAATACGATAATGCCATCAACGATGGTAGTCATGTTCTGAGTTTTGCCGACACCAAAGAAATAACTCAGACAAATAAGACTGAAGAtcaatctcaaattataatcaaatcaCCAAAGAAAAGGGCAATCAGTAAATCGATAAACCTTCAAGAGTCAGATTCTGCAAAACTCTCAAATGTCGAAATCAAAGAAATAAATGGTAATTCGGTTGCGTTGACAGAAGGAAAAAGGCCTACCAAGGGATTGAAAGAATATTCGTGTACGGAGTGTGAGAAAGTCTTTAGGTACTCCCACGCCCTGAAGGTGCACTTCCGCCTGCACACGGGCCAGCGCCCCTTCGCCTGCTCCGAGTGCCCCAAGACCTTCACGCAGGCCGGGCAGCTGCGCGAACACGCGCGCACTCACGCCGGGGAGCGCCGCTTTCAGTGCCAGCACTGCGGGAAGGCTTTCATCAACTCCACTCATCTTAAGTCGCACATGAAGACCCACTCCGGAGAGCAGCCGTACTGCTGTGAGATTTGCCACAAGAAGTTTGCTCACCGGGTCGGCTGGAAGCTGCATCAGAACATTCACACAGGAGACACCCCCTACAAGTGCGAGGTCTGCGGAAAAGGATTCCGTCAGCCTTCATCTCTCCGCTCCCATCAGCGCACGCACTCGGGCGAGCGCCCTTACCACTGTGCTACATGTGGCGCCTCCTTCGCTCAGCGCAGCACCCTTGCCAGCCACCGCCGTACTCACCGCAGTGGGCTTGATCGTGTCGCCCCGATCGAAAGGATGCCGGTGGTCAAGAAGTTCCCCTGCCTCAAGCGCGGATGCGAAAAGGTGTTTGGGCGGAAAGCGCATGTTAAAAGGCATATGGATACTCATAGGATTGTGTCGGATACTATAACTTGA
Protein Sequence
MDRNTAIDDLIIKPFKCEFCPKSFKLNCTLKTHLRTHTGEKPFQCDVCLKKFTQSGHLKEHSRTHTGEKPYQCAECGNSYVNGSHLRAHARSHSRERPHLCPQCPATFAHLHALKGHLATKHGRPAYRSYVPPERKNGVKKFVCVVCGSAFRLSHSLKVHLRSHSGDRPYKCELCAKAFTQASHLQSHQSTHSSSGAHTCSVCGRRCGSALLARRHVRSHAPHHRTYRCSACGESFQKLARLKTHARRHTGEKAYKCGVCSRSFSLPALLVSHMRTHSGEKPFQCEVCSKCFAQRSVLACHLRMHAGDKRYVCDICTKKFISQSDLVKHRRIHTGEKPYKCEFCNSCFGRSNHLTRHMKIHFRSKKTQDTNTLNNRECKYDNAINDGSHVLSFADTKEITQTNKTEDQSQIIIKSPKKRAISKSINLQESDSAKLSNVEIKEINGNSVALTEGKRPTKGLKEYSCTECEKVFRYSHALKVHFRLHTGQRPFACSECPKTFTQAGQLREHARTHAGERRFQCQHCGKAFINSTHLKSHMKTHSGEQPYCCEICHKKFAHRVGWKLHQNIHTGDTPYKCEVCGKGFRQPSSLRSHQRTHSGERPYHCATCGASFAQRSTLASHRRTHRSGLDRVAPIERMPVVKKFPCLKRGCEKVFGRKAHVKRHMDTHRIVSDTIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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