Laur003952.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- SCRT1
- Assembly
- GCA_951813805.1
- Location
- OX638391.1:4121493-4122563[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6.3e-05 0.077 13.7 0.7 12 38 200 223 196 228 0.87 2 5 0.067 83 4.0 0.5 18 28 237 247 231 262 0.81 3 5 0.017 21 5.8 0.2 18 28 263 273 253 285 0.81 4 5 0.00028 0.34 11.6 0.4 19 41 292 311 280 313 0.88 5 5 0.14 1.7e+02 2.9 2.7 14 43 315 341 311 342 0.88
Sequence Information
- Coding Sequence
- ATGCACTTCACGGCCTACCTACCACGCGCCGAGGGAGAGGAGGTCTCTAGCACCGCCTCCTCTCCCAGCAGCCAGCCGTCCTACGCCACTCTGCAACCTCCATCCGAGACGTCTGAAGTAAGAGCCTTCCACCCTCCTCCTCCCCCACCACCGAGTAGGAAGTCTCTAGCCATGTGCTTCACCAGCACGGGGGCTGCCCTCTCTCTGCCACCCAAGAAGAAGGACATCTACCGGCCCTACTCTCTCGACGACAGACCTCAGAGGGCCATGGAGTTTCGAATACCAGCAGAAGAAGACTTACACGCCGCGCACGCTATCCTGGACCTCAGCCAGAGTACCGCTTTCTTGCCTATCCCTCCTCTCCCTCCTCCCCTCCCTCAGCCTACTGTCATTCAAGAGCTCATTATCGACGACCGGTTGCAAGACTCGCCAGAACCAGAAATTTACGATGACGAAAAATCAGAGTCCAGAGACATTCGAACCGGGAAAACTGTCGCTTATACTTACGAAGCCTTTTTTGTGAGCGACGGAAgatcaaaaagaaaaaacgtCGCTTCCGTCGCGGGTGCAACAATCGACAAGACTATAATTGCACCTGACAGCAAGACCAAGTATACCTGCAGCGAGTGCGGCAAACAGTACGCCACCTCCAGCAACCTGTCGCGGCACAAACAGACGCACCGCAGCCTGGACTCGATGGCGGCCAAGAAGTGCATGACGTGCGGCAAGGCATACGTGTCGATGCCGGCGCTGGCCATGCACGTGCTGACGCACAAGCTGTCGCACGCGTGCGGCGTGTGCGGCAAGCAGTTCTCCCGGCCCTGGCTGCTGCAGGGCCACCTGCGCTCCCACACGGGCGAGAAGCCCTACGGCTGCGCGCACTGCGGGAAAGCCTTCGCAGACCGCTCCAACCTGCGCGCGCACATGCAAACGCACTCGGCCGACAAGAACTTCGAGTGCGCGCGCTGCCACAAGTCCTTCGCCCTCAAGAGCTACCTCAACAAGCACCTAGAGTCTGCTTGCTTCCGAGAGGGGGAGCAAGACGAGTCCGTCCAGGAAGACGCGGCTTGA
- Protein Sequence
- MHFTAYLPRAEGEEVSSTASSPSSQPSYATLQPPSETSEVRAFHPPPPPPPSRKSLAMCFTSTGAALSLPPKKKDIYRPYSLDDRPQRAMEFRIPAEEDLHAAHAILDLSQSTAFLPIPPLPPPLPQPTVIQELIIDDRLQDSPEPEIYDDEKSESRDIRTGKTVAYTYEAFFVSDGRSKRKNVASVAGATIDKTIIAPDSKTKYTCSECGKQYATSSNLSRHKQTHRSLDSMAAKKCMTCGKAYVSMPALAMHVLTHKLSHACGVCGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNFECARCHKSFALKSYLNKHLESACFREGEQDESVQEDAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00675453;
- 90% Identity
- iTF_00898147;
- 80% Identity
- iTF_00898147;