Laur026430.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- otx5-b
- Assembly
- GCA_951813805.1
- Location
- OX638417.1:1235566-1244358[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 6.9e-05 23.1 0.0 4 33 139 168 139 173 0.95
Sequence Information
- Coding Sequence
- ATGGCTTACCTCAAAGGGTCCCCCTACGCCATGAGCGGTCTAGGACTACCACACACAGTGGATGGGTACCCGTCGGGTCAGTTCAATCCCTTATTCTTGAGTCATcacctcattgctgaggatcgtgaatCGCGATCTACTCCAATTGCCCTGATGAACAAGGCTTATCCTCTCCTCGTCTTGCACTGTATGAAGAGCCAAGGAAACTGCTGTAATCCAAGGAAACAACGAAGAGAAAGAACAACCTTCACCAGAGCACAACTGGATATTCTGGAGTCTCTGTTTGGGAAGACCAGGTATCCTGATATCTTCATGAGGGAGGAGGTAGCCCTGAAGATCAATCTTCCAGAATCCAGGGTTCAGGTCAAAATGTCGGAGAAGAAACAGCGGAAGACGTGGAACACAGAAAAATTTGATATGATAAAAGCCATGGAAGCTGTAAAATCAAAGACCCTGGGATATCAGAAAGCAACCATTCTTTACGAGGTCCCTCGAAGCACTTTATTCACACTTTGTAAGCCTAGCGCTAAAGAAGATGCCATGGAAGCTGCGCCTGGACGAAATTCAGTCTTGGGCCCAGTTTTAGGCGACAGTTGCTGGATTACCTATCCAAACAGAACTATTTACGGACTGATGGTTCCAGCACTTCATCAAATATACGAAACTAAAATCTTGACGGACTTTACAGCCACACACTCAGCATTGATGTTATAG
- Protein Sequence
- MAYLKGSPYAMSGLGLPHTVDGYPSGQFNPLFLSHHLIAEDRESRSTPIALMNKAYPLLVLHCMKSQGNCCNPRKQRRERTTFTRAQLDILESLFGKTRYPDIFMREEVALKINLPESRVQVKMSEKKQRKTWNTEKFDMIKAMEAVKSKTLGYQKATILYEVPRSTLFTLCKPSAKEDAMEAAPGRNSVLGPVLGDSCWITYPNRTIYGLMVPALHQIYETKILTDFTATHSALML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897675;
- 90% Identity
- iTF_00897675;
- 80% Identity
- iTF_00897675;