Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 5.9e-08 3e-05 24.3 0.0 3 35 13 45 11 49 0.93

2 3 1.8 9.1e+02 0.3 0.8 2 10 53 61 52 62 0.90

3 3 1.7 8.5e+02 0.4 0.2 28 34 155 161 154 164 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	5.9e-08	3e-05	24.3	0.0	3	35	13	45	11	49	0.93
2	3	1.8	9.1e+02	0.3	0.8	2	10	53	61	52	62	0.90
3	3	1.7	8.5e+02	0.4	0.2	28	34	155	161	154	164	0.83

Coding Sequence: ATGTCGGAGAAGAAACAGCGGAAGACGTGGAACAcagaaaaaatgataaaagccATGGAAGCTGTAAAATCGAAGATCATGGAATATCAGAAAGCCGCCATTCTTTACCAGGTCCCTCGAAGCACTTTATTCAGACTGTGTAAGCCTAGCGCTGAAGAAGATGCCATGGAAGCTGCGCTTGAACGAAATTCAGTCTTGGGCCCAGTTTTAGGCGACAGTGGCTGGATTACCTATCCAAACAGAACTATTTACGGACTGGTTCCATCACTTTATCAAATATACGAAATTGACGGACTTTACAGCCACACACTCAGCATTGATGTTATAGATAAAACTCGTGAGCATCGTGTCACCATTCTGTACATACCTTCACATTCGACCCTCAAACTGCAGCCCCTCGATAAGGGTGAGGACTTCCTAGAAAATGAGGACCAAGAAAATGATTGTCCCAACTCAATCAGTATTCCAACTAGCACGTTACTTCCATCTGCTGACCCAAGCCTGTCCTCATAA
Protein Sequence: MSEKKQRKTWNTEKMIKAMEAVKSKIMEYQKAAILYQVPRSTLFRLCKPSAEEDAMEAALERNSVLGPVLGDSGWITYPNRTIYGLVPSLYQIYEIDGLYSHTLSIDVIDKTREHRVTILYIPSHSTLKLQPLDKGEDFLENEDQENDCPNSISIPTSTLLPSADPSLSS

Sequence clustering based on sequence similarity using MMseqs2