Laur006458.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638393.1:8763980-8764321[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.9e-09 4e-06 27.1 0.0 10 35 5 30 4 35 0.91
Sequence Information
- Coding Sequence
- ATGAAAACCATGGAAGCTGTAAAATCGAAGACCATGGGATATCAGAAAGCCGCCATTATTTATGAGGTCCCTCGAAGCACTTTATTTAGACTGTGTAAGCCTAGCGCTGAAGAAGATGCCACGGAAGCTGCGCTTGGACGAAATTCAGTCTTGGGCCCAGTTTTAGGCGACAGTTGCTGGATTACCGATCACTTCCATCTGCTGACCCAAGCCTGTCCTCGTAAACCCACATATAATTACGCCCTACATAAACAAGAAAAGACGGTTTCCACTAGAGGAAGAAAAGCAGGAAAAACTGCAGAAGAAAAGGGGTGTTGTGAAATATGGCACGAAAATATTTGA
- Protein Sequence
- MKTMEAVKSKTMGYQKAAIIYEVPRSTLFRLCKPSAEEDATEAALGRNSVLGPVLGDSCWITDHFHLLTQACPRKPTYNYALHKQEKTVSTRGRKAGKTAEEKGCCEIWHENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897735; iTF_00897726; iTF_00897728;
- 90% Identity
- iTF_00897735; iTF_00897726; iTF_00897728;
- 80% Identity
- -