Laur008994.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- bab2
- Assembly
- GCA_951813805.1
- Location
- OX638395.1:25377651-25382045[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-10 3e-07 30.7 0.0 2 35 370 404 369 409 0.92
Sequence Information
- Coding Sequence
- ATGGGACAAGAATCTGTACCATTACCATATAATACAATTGTGAGTATCTACCATACAAGACGGGACAACACTGTTGCACGGAACATCGCTACATTCGGCCAGACTCATGAATTGACGCAAGGCATCATCAGGAATCTGCAAGATGCCCCGTCCACCGCGTACGAGTCAGCCGATGACAACCCCTGGGAGTGCATTCAGAGTGAGATCTCGCAGGAGGGGTGCGACACAGACTCCAGGTTGCCCGGGGAGTTCTCAACCACCGCTTCTTTACAGTTCTGCCTTCGCTGGAACAATTATCAGACCAACCTGACCAATGTGTTCGATCAACTCCTACAAAGTGAGTCCTTCGTAGACGTGACCCTCGCTTGTGATGGCCGGAGCCTCAAAGCCCACAAAGTAGTTTTATCCGCCTGCAGCCCTTACTTCCAATCTCTGTTTTACGAGAACCCGTGCCAACATCCCATTGTCATCATCCGCGACGTCACCTGGCCGCAGCTCAAAGCCGTGGTGGAGTTCATGTATAAAGGTGAAATCAATGTGGCGCAGGAACAACTTGCACCGCTGTTGAAAGTAGCCGAGATGCTCAAGATTCGAGGACTCACCGAAGTCAACAATCCAGATCATGATGTTGCCGAAGTGGACAAATCTTCACATTCCACTAATAATGAAATAGTAACCAAAAGAGAAATGCCAAGTTGCGATATTGATCCCCCTAAATGTAAAGTTCGAAGAAAGAACTCACCGAACCGCCTCCCTTTAAATGCTCATAATTCAGAAATTGGATCTCATTCATCACTCGACATAACGTCtacctctctttcctttctgCAAACTCAAATAAAGAAAACTGCCATATCTCAACAAAACTGCTTCTACCTTTCCTCACCAGATCCGCAAATATCTACATTGACCCCCATTCCTGCCGCTGTGACTGCTCCACATAACGATAACGCTCTTCTTGTCAAGCCATCGGTGTCCGAGACTCGTgaagaaagtccaaataaaatATGGAAAAGTACTCCAAGCCTTTTAGGGGCATCCACATCATCCAATTCTGAGTTTGCGGGGAGCCCCTTGAAGCACAACAACAAGCCGATGACCTGGTCGCAAGAACAATTGCAAGATGCGATACATGCGGTGGTTACCCAGCAAATGCGATTCACACAAGCCTCGGTCAAATACGGTATACCCAAAGGAACGCTTTATGACAATATCCTGGGAAAGTCCAAACGAATGCTAGTTTTGGATGAAGCTGGTTTATCAAACGAGGAAGAACGAACAGTATTGGAGTTTTGCTGTGATGTTTCGGTTTCTCCATATAATAGGCGAACCAGACGATCTCTTGCCACTGTCCTGGAATTCGTGCAAAGATTGAGACGAGTTCGTGATCCAGAATTCACCTTCACCGGTTTGGCGGGATTCCGCTGGTGGTGGGCTTTCTGCAAAAAACATTCCATTGTTTCATTGTACTATGACAACAAAGCATTGTCAAATTCCACAAGTATTGAAATATCTGCCtga
- Protein Sequence
- MGQESVPLPYNTIVSIYHTRRDNTVARNIATFGQTHELTQGIIRNLQDAPSTAYESADDNPWECIQSEISQEGCDTDSRLPGEFSTTASLQFCLRWNNYQTNLTNVFDQLLQSESFVDVTLACDGRSLKAHKVVLSACSPYFQSLFYENPCQHPIVIIRDVTWPQLKAVVEFMYKGEINVAQEQLAPLLKVAEMLKIRGLTEVNNPDHDVAEVDKSSHSTNNEIVTKREMPSCDIDPPKCKVRRKNSPNRLPLNAHNSEIGSHSSLDITSTSLSFLQTQIKKTAISQQNCFYLSSPDPQISTLTPIPAAVTAPHNDNALLVKPSVSETREESPNKIWKSTPSLLGASTSSNSEFAGSPLKHNNKPMTWSQEQLQDAIHAVVTQQMRFTQASVKYGIPKGTLYDNILGKSKRMLVLDEAGLSNEEERTVLEFCCDVSVSPYNRRTRRSLATVLEFVQRLRRVRDPEFTFTGLAGFRWWWAFCKKHSIVSLYYDNKALSNSTSIEISA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897925;
- 90% Identity
- iTF_00897925;
- 80% Identity
- iTF_00897925;