Laur000193.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638388.1:5293247-5297014[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 5.5e-07 29.8 0.0 3 37 114 149 112 152 0.92 2 2 3.6 1.8e+03 -0.6 0.1 2 9 154 161 153 162 0.90
Sequence Information
- Coding Sequence
- ATGGTGGGCTGCGGAGTGCGGCTGGAGCTGCCTTCCCTCTCCCGCTCCAAACTGGCCGCCCTGTCTCTGGAGCCTGCTAGTGATGGCGCAGTTTCCAACATTGTCACCTCTCTATGGCTCCGGCGGGGCACTAATTATATTCACTGGCAGCTGGACACGTGCTCGCTGGTCGCTTTGCGGCTAAACATAGTAGCTCCGTCAGGTTTCGCTTTCGAAAAGGCCGTGTCCTTGTCGCAAATAGATTACGCCAATTGTCATTTCGCCCGGGAAACTTTTGTATCTTGGAATACACGAAGGTCAAAATGTCGGAAGAAGAAACAGCAGAAGAAATGGAACACAGAAACATTGATAAAAGCCATAGAAGCTGTAAAATCGAAGACCATGGGATATCAGAAAGACGCCATTCTTTACGAGGTCCCTCGAAGCACCTTATTCAGAATGTGCAAGCCTAGCGCTGAAGAAGATGCTATGCAAGCTGCGCTTGGAAGAAAATTCAGTCTTGGGACCATTCCAGCACTTCATCAAATATACGAAACTTAA
- Protein Sequence
- MVGCGVRLELPSLSRSKLAALSLEPASDGAVSNIVTSLWLRRGTNYIHWQLDTCSLVALRLNIVAPSGFAFEKAVSLSQIDYANCHFARETFVSWNTRRSKCRKKKQQKKWNTETLIKAIEAVKSKTMGYQKDAILYEVPRSTLFRMCKPSAEEDAMQAALGRKFSLGTIPALHQIYET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -