Laur004490.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- ttk
- Assembly
- GCA_951813805.1
- Location
- OX638391.1:24519653-24525174[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-15 6.1e-13 48.9 0.0 1 42 374 416 374 419 0.94
Sequence Information
- Coding Sequence
- ATGTCGGTCCAGCAGTTCTGCCTCCGGTGGAATAATCATCAACCCAACTTCATATCGGTGTTCACGTCGCTGCTCAGCAGCGAGTCACTGGTGGATGTGACGTTGGCAGCCGAAGGGAAGCACATGCAGGCGCATAAAGTGGTGCTATCGGCTTGTAGTGTATACTTTCAGACACTCTTTACCGCAAATCCATCTCGCCACCCGattgtcatattgaaggatgtAAAGCACTCTGACCTCAAGATACTGGTGCATTTCATGTACTATGGAGAAGTGAACGTTTCCCAGGAGCAGCTGCCCCAGATACTGGAGACGGCCAAGATGCTGAAGATCAAGGGGCTGACGGAGATGCCAGAGCCGGCAGCCGGGGCCAGCGGCAATAACGCTGGCGAGAGGCCCAACCTGCTCACGCCAGGCGACTCTTCATGGCACTCGGATGTGCCACATCACTCTCTGTCGCCGTGCAATTTATCCCCTTCTGCTAGGAAAAAGAGGCATCGGAAACCTTCAACAGAGTCACGTTCAACATCACGGGAGAGGATGACGGAAGAAAAATCATTTGATGATGTGAATAACATTGGAAGACCTGATGGGATTTCACTCAACAACTTTAACATCAACCCTTTTTGCGTCAAAGGCAGAATGAAAGAACCACAAATACCAGAATATAATACGTCTAAAGATAGTTTTGAAGAAAATGGTGGAATGGATAGCAATTTAAttattGATCCCGAAGAAGAGCCTAATGATTGCGATTTGATGCGAGTACCTGATGACCCTTTAGAGGGTCCCAGTGCTATGGGTGCTCCTCAACAagGGCAATGGACTCTAATGGAACACAGCTACCCGAGATATACAGCTCCGTGCCAGCCCAACAACTTACACGGCTTATCGGCTATTAATATGAATTCAATGCACAACACGGACCCGAGCACACATCCCTTTGGAATGCAGTCCATGATCAACCCGTATGACTATCAGCCTCAGAGTCAGAGTCAATCGCAAAGTGACGAAGTTGAAGAGAACTCCCCTGGTCCCTCGTGTTCCAGTTCCATGTCAAATTTACTTCAGGACAACCAGCAGCCGACACCCAAAAGGAGGAGGACTTCTAATCCTCAATCGGAAGAAAACTTTCAGCGAGCTTTGGAAGCCGTGCGGTTTGGAGGTATCGGCTTCTGCAAGGCGGCCCGGATGTTTGGAGTGAATAACAGGACTCTGTGGCTCGAGTACAAGAAGAAGGGTTACCCCAACACGAGACCCAGCATTAAGAATAGGATAAAGCAGGAGCACTCGTCTCCTCCGCCCGAGGTGCGCGACGAGAGCATCCCCAACATCCAGGAGCAGCAGCTGACCCTGCTGTGCCCTCCGCACCCAGTGGGCATGATGGGCTTCATCGACTCCCGCCACGTAGACTTCTCCTCCACTATACAAAACATCAACCGACCCAGGTTTGTAGAGGACACTATGAACTTGCACAATTCTCCTTTGAACTTGCACGGTATTAATTTCAATGCTATTCAGTAA
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVFTSLLSSESLVDVTLAAEGKHMQAHKVVLSACSVYFQTLFTANPSRHPIVILKDVKHSDLKILVHFMYYGEVNVSQEQLPQILETAKMLKIKGLTEMPEPAAGASGNNAGERPNLLTPGDSSWHSDVPHHSLSPCNLSPSARKKRHRKPSTESRSTSRERMTEEKSFDDVNNIGRPDGISLNNFNINPFCVKGRMKEPQIPEYNTSKDSFEENGGMDSNLIIDPEEEPNDCDLMRVPDDPLEGPSAMGAPQQGQWTLMEHSYPRYTAPCQPNNLHGLSAINMNSMHNTDPSTHPFGMQSMINPYDYQPQSQSQSQSDEVEENSPGPSCSSSMSNLLQDNQQPTPKRRRTSNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNTRPSIKNRIKQEHSSPPPEVRDESIPNIQEQQLTLLCPPHPVGMMGFIDSRHVDFSSTIQNINRPRFVEDTMNLHNSPLNLHGINFNAIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897927; iTF_00675062; iTF_00675224;
- 90% Identity
- iTF_00897927; iTF_00675062; iTF_00675224;
- 80% Identity
- iTF_00897927;