Laur010045.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638396.1:24059928-24070583[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-10 2.2e-07 31.1 0.0 4 39 201 237 198 241 0.90 2 4 3e-11 1.5e-08 34.8 0.1 2 39 253 290 252 293 0.93 3 4 3.2e-15 1.6e-12 47.5 0.0 2 45 308 352 307 352 0.97 4 4 1.3e-17 6.6e-15 55.2 0.0 1 41 359 400 359 402 0.95
Sequence Information
- Coding Sequence
- ATGACTGGCCACCCCGATTCCCCCTCGGAGCAGGGGGGTATGGCAGGGGGTGGGAGGGGAGGCGGCACGGGGGAACCACAAGATGAGGTGCACACACACTCACAGCAGCAGCACAACACAATCCTACAATCTTTACAAaatgtcAACAACAGTGGTGAAAACATAAACTGTATAGAATCTGAGTATTCCCTTCCCGTTCCAATGGCCCCCGCAGCTACCCCAGTTCAAGTTTCCACCAATGCTTTGGATCCCAATGACACCTCACTCCTCCACCAGGATGCAGCATGCGGGAGTGACTCCTCGACTGATGTTAAGATCAAATTTGAAACATTGCGCTCTCTGAGTCAGCAAACCACCCTCGACATGGACACACATATGAGCCAGCAAGCTCAAAATCTCATTTCTTCACACCGGCCAATGATGCGCAATTCTGACATGATGAACCTAATGCCAGAAGATCAGGATGCTTGTAAAGAAGATATCTTGGGAAATGAAGATATGAATGACTCTTGCCAGGATTTGTCTAACGATGGAATGTCACCGGGAAGTAGGGGATCCGGTCTACATGGAGGAAATACTCCCAAGACTTGGTCCCAGCATGATATGGAAAATGCTTTAGACGCGTTGAGAAATCATAACATGAGCCTAACAAAGGCATCTGCAATGTTTGGGATACCTTCTACAACATTATGGCAGAGGGCGCATAGATTGGGAATAGACACACCCAAGAAAGAAGGCCCTTCCAAGTCCTGGAGTGAGGGAAACCTTCACAGCGCTTTGCAAGCTCTTAGAACTGGGACCATTTCAGCCAACAAAGCCAGTAAGGCGTATGGTATTCCCAGCAGCACACTGTATAAGATAGCCCGTAGAGAGGGCATCAGACTGGCGGCCCCGTTCAATGCAGCCCCCACGGCCTGGAGGCCCGGGGACCTGGAGAGGGCACTGCACTCCATTCGATCTGGGCATTCTTCTGTACAGAGGGCTTCTACAGAATTTGGAATTCCGACTGGAACATTGTATGGTAGATGTAAAAGAGAAGGCATAGAACTTTCTCGTTCAAATCCAACTCCCTGGTCAGAAGATGCTATGGGTGAAGCGTTAGAAGCAGTCAGaGTTGGACAAATGTCAATAAATCAAGCAGCAATACACTATAATCTGCCATATTCATCTTTATATGGtcgttttaaaagatttaaatacgATGGAGACATTAACGGACCAATTGATATATCTGCTCAACATAATATTCAAGACTCCCATGGACCGCATCATatgttGCAGCAGTCATCTCAAGCTGTTCACATGCTGGACCACAATAATCACATAGATAATTCCCAGCATATGTATTCCGTCTACCATCATCCGCTCGTTCTTCCAGTTTCTATACACAATCCTGGCGACAATAATAGTGTCAACCACGCCAATCAAGACTGCATTCCGATaagttga
- Protein Sequence
- MTGHPDSPSEQGGMAGGGRGGGTGEPQDEVHTHSQQQHNTILQSLQNVNNSGENINCIESEYSLPVPMAPAATPVQVSTNALDPNDTSLLHQDAACGSDSSTDVKIKFETLRSLSQQTTLDMDTHMSQQAQNLISSHRPMMRNSDMMNLMPEDQDACKEDILGNEDMNDSCQDLSNDGMSPGSRGSGLHGGNTPKTWSQHDMENALDALRNHNMSLTKASAMFGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHSALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALHSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRFKYDGDINGPIDISAQHNIQDSHGPHHMLQQSSQAVHMLDHNNHIDNSQHMYSVYHHPLVLPVSIHNPGDNNSVNHANQDCIPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -