Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990250.1:7390620-7394919[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00035 0.031 15.4 2.5 1 21 364 384 364 385 0.94

2 8 0.13 11 7.4 3.6 2 23 391 413 390 413 0.95

3 8 1.5e-05 0.0013 19.7 0.5 1 23 419 442 419 442 0.98

4 8 0.017 1.5 10.1 2.4 1 23 448 471 448 471 0.96

5 8 0.0016 0.14 13.3 2.4 1 23 495 518 495 518 0.97

6 8 0.074 6.6 8.1 9.6 1 23 524 547 524 547 0.97

7 8 2 1.8e+02 3.6 5.5 2 23 555 577 554 577 0.95

8 8 4.1 3.7e+02 2.6 10.1 1 23 612 635 612 635 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00035	0.031	15.4	2.5	1	21	364	384	364	385	0.94
2	8	0.13	11	7.4	3.6	2	23	391	413	390	413	0.95
3	8	1.5e-05	0.0013	19.7	0.5	1	23	419	442	419	442	0.98
4	8	0.017	1.5	10.1	2.4	1	23	448	471	448	471	0.96
5	8	0.0016	0.14	13.3	2.4	1	23	495	518	495	518	0.97
6	8	0.074	6.6	8.1	9.6	1	23	524	547	524	547	0.97
7	8	2	1.8e+02	3.6	5.5	2	23	555	577	554	577	0.95
8	8	4.1	3.7e+02	2.6	10.1	1	23	612	635	612	635	0.94

Sequence Information

Coding Sequence: ATGATACTTAATACTTTACAGGTTATACTAGGCTTGGATTCAGTTGCCGCTATGAAGGTATGCAGAGTGTGCCTCGCCATAAATGTTAAGATGTATCACCTGTGGGAGCACAAGCTCAATGTTATGTATGAGCGAGTCACTGGTGTTGAGATAAGAACAGAAGATAAATTACCGGAAATGTTATGTTGGGAATGTGTTGCCAGATTGTCATCTGCAAATCATTTTAGAGAGAAAGCATTTAAAACTCATGGGATATTGTCTAATAAAATAAAAAGCAACGGATTGATAACAATGAGTGATATTGAATCAATAGACAAAGCCGAGTATCAACTTGTATCTACCCTTGGGTTTAAATATAATAAAGGGAATGAGCCCAATTTGTATATAGTAACAGAAAGTGACATTGCTAATGAATGTAACAATGAAACCACACATAAATTAACTCACAATTGCTATGATAATAGTAAAACAAAAATGTATGAAACAAATGTGGATTGTATAATAGAAATAGAAAATGAAATACTACAAAATATTAAGACTGAAATTGAAGAAAATAATGAAGTAGATCCAATTAAAATTGAATATTTTGATGCAAATGAAGCGCGTCAAGTTGAAGATTTTCAGATTCCAAAACCTGTGAGGATACCAGAAAATTTAAGTGGTGAAGAAGTACCAATTGAGCATGTAAGCTATGTCTGTGTAAAGACTGAAGACAAAAATGATTTAGGGGATGAAACAAAAACATTTGAAAAGCTAAGTCGGAAGAGGAAACATGCTAGTGAGACACCACTGAGGGAGAGTAAAGCATCACCTCATTGTAAAGAAATGCGAGTGGTCTTAGAGGATGAAAAGTTGGATAAATCCTTTAAGCAAGAAACAGGTAATGCTGTAACGGCAAAAGATATTGAGGTTCTATGCTATCGACCAATCAAGAAGGAAAGTATATTCGCGGTAGAAAATAATTTCCTGGAGACAGTAACTGACAACCAGGACACATATACAAATCCAAGTTATGAACACTTTAACATTAGTGATCCTGGACATAGTGGCGTTGAGTTAAAGCACAACAATACTGAATCTTCAAAGCCCTATATTTGCGGTACTTGTGATAAAAGGTACAGCAACAAAAAAACTTTGAAACAACATAGGTGTGGCCAAGCAAAGTTGTTAAGCTGCTCTTATTGCAGTTTTAAAGCTTATCGGAAGCTCCAACTTAAACATCACATTAACAGTAAACACACTAAAAGTGATTGTTTTGTTTGTGATTATTGTGGATATGTATCGTATCGAAAAGACTATCTCGCTATACACATTAAAACTAAACACTCTAAACGTGTCTATTATGATTGCACTTATTGTAATTATAAATCAACACGAAAATATATACTTAAAGAACATATTAACAATAAGCACACTAGAAACATATCTTCTAGTTCTACTAAAACTAATATCAAACGTGTTAGCAATAAACCCCATAAATCTTATATTTGTCCTCTCTGTAATTTTGAAACTACCCGACAATTTACACTTAGAGAACATATTCACACTAAACACACCAAAAGCCTCACTTTCAAATGTGATCACTGTCCTTATAGAACTCACAACAGATACTGTCTCAAGAACCACATTAAGAATAAACATACATCGGAAAAGGAATATTTATGTTGTAGTTATTGTGATTATAAGGCACAACACAAACATAGACTCGCTGAACACATCAACTCGCAACACACTAAAAAGACTAAATACGATTGCACTTACTGCAGCTTTCAGACGTATCACAGGACCAGTCTCTTGTGCCACATCAATGCTAAGCACACTAAAACTGATTCCTATAAGTGCTCGCATTGTAGTTTTAAAACTTTCCATAAATATAAATACACACAACATGTCAAACAAAAACATCCTGAAAATTGGACAGTGAATCTATTAGAAGAAAATAAACCGAAATAA
Protein Sequence: MILNTLQVILGLDSVAAMKVCRVCLAINVKMYHLWEHKLNVMYERVTGVEIRTEDKLPEMLCWECVARLSSANHFREKAFKTHGILSNKIKSNGLITMSDIESIDKAEYQLVSTLGFKYNKGNEPNLYIVTESDIANECNNETTHKLTHNCYDNSKTKMYETNVDCIIEIENEILQNIKTEIEENNEVDPIKIEYFDANEARQVEDFQIPKPVRIPENLSGEEVPIEHVSYVCVKTEDKNDLGDETKTFEKLSRKRKHASETPLRESKASPHCKEMRVVLEDEKLDKSFKQETGNAVTAKDIEVLCYRPIKKESIFAVENNFLETVTDNQDTYTNPSYEHFNISDPGHSGVELKHNNTESSKPYICGTCDKRYSNKKTLKQHRCGQAKLLSCSYCSFKAYRKLQLKHHINSKHTKSDCFVCDYCGYVSYRKDYLAIHIKTKHSKRVYYDCTYCNYKSTRKYILKEHINNKHTRNISSSSTKTNIKRVSNKPHKSYICPLCNFETTRQFTLREHIHTKHTKSLTFKCDHCPYRTHNRYCLKNHIKNKHTSEKEYLCCSYCDYKAQHKHRLAEHINSQHTKKTKYDCTYCSFQTYHRTSLLCHINAKHTKTDSYKCSHCSFKTFHKYKYTQHVKQKHPENWTVNLLEENKPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -