Lcam020757.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990250.1:7110416-7129511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0047 0.42 11.9 0.4 1 23 552 575 552 575 0.96 2 24 0.47 42 5.6 8.7 1 23 579 602 579 602 0.96 3 24 0.033 3 9.2 2.5 1 23 608 631 608 631 0.94 4 24 1.5 1.3e+02 4.0 4.3 1 23 637 660 637 660 0.92 5 24 0.042 3.7 8.9 1.0 1 23 666 689 666 689 0.97 6 24 0.0096 0.85 10.9 1.9 3 23 695 716 693 716 0.96 7 24 5.1 4.5e+02 2.3 0.7 1 23 722 745 722 745 0.95 8 24 6.8 6.1e+02 1.9 0.8 1 23 784 807 784 807 0.94 9 24 4.1 3.7e+02 2.6 2.8 1 23 871 894 871 894 0.96 10 24 0.57 51 5.3 0.5 1 23 900 923 900 923 0.97 11 24 5.7 5.1e+02 2.1 1.3 1 23 929 952 929 952 0.91 12 24 0.57 51 5.3 0.5 1 23 958 981 958 981 0.97 13 24 1.7 1.5e+02 3.8 1.4 1 23 987 1010 987 1010 0.96 14 24 0.57 51 5.3 0.5 1 23 1016 1039 1016 1039 0.97 15 24 1.5e-05 0.0013 19.7 1.5 1 23 1045 1068 1045 1068 0.97 16 24 1.5e-05 0.0013 19.7 1.5 1 23 1074 1097 1074 1097 0.97 17 24 0.01 0.92 10.8 1.0 1 23 1103 1126 1103 1126 0.97 18 24 0.011 0.94 10.8 1.2 1 23 1132 1155 1132 1155 0.97 19 24 0.09 8 7.8 1.2 1 23 1161 1184 1161 1184 0.97 20 24 0.15 13 7.2 0.7 1 23 1190 1213 1190 1213 0.97 21 24 0.032 2.8 9.2 1.9 1 23 1219 1242 1219 1242 0.97 22 24 0.00083 0.074 14.2 1.5 1 22 1248 1269 1248 1272 0.90 23 24 0.0039 0.35 12.1 1.1 1 23 1278 1301 1278 1301 0.97 24 24 0.047 4.2 8.7 1.7 1 23 1307 1330 1307 1330 0.94
Sequence Information
- Coding Sequence
- ATGGTGTTTAAACGCTCTAAAAAGTCAGTGCCTCCGACTGATGGAGATGGAAAAGTAAAAAATGATGAAGAAGAAGATATGGTGCTCAATAATGAAAGTTTATACGCTCTAGAAAGGGAAGCACTGGTGGAGATGGAAAAATTATTGGCTCCACATTGCGAAGGAGTCGATCAACTGATCACTGTTGCACCAGACTCGGATACAGTTGTCACAATGGAGGTCTGCAGAGCATGTCTCGCCATGAATGTGAAAATGTATCACATATCAGAGCACAAACTGAGTATTATGTACGAGCAAGTCATTGGTGTTGAGATAAACACAGAGGATTACTTTCCTAAAATGCTATGTTGGGAATGTGTTGCTAGATTATCGTCTGCAAATAGATTTATAGAGAAGGCAGTAAAAACACAATGGATTTTGATGAATAGAACAAATGGCAGCAGATTTGTAACAATGAGTGATATTGAATCAATAGACAAAGAAAAGTATCAACTGGAATCTACACTCGGGATTAAATATTACAAAGAAAATTACTCCAATTTGCATATAATAAAGGAAAGTAATAATATTTCGTGCAACTATAAGGAAATCGTGCCTGAGGTAAATAACAAAGATTCCGGTATTGAAAAAGAGGTAGAATTTCGTGAGACTAAGACTGATGTTGATTTAGAAAATGAATATAATAATGAAAACATGGCAGAGATCAATAATAAGGATTCCGGTAAAGATAAAGAAGAGGAATTTCATAAGGTTACGACTGAAACTGGTGTTGATTTAACAAATGAATGTGATAATGAAATCATGGCAGAGGTAAATAACAAGGATTCCTGTAAAGATAAAGAAGTACAAATTAATAACATTAAAACTGAATCTGATTTTAATATAACAAATGAATGTAATAATGAAATTATGGCTGAGATAAATGACAAGGATTCCTGTAAAGATAAAGAAGTACAAATTAATAACATCAAAACTGAATCTGATGTTGATATAACAAATGAATGTAATAATGAAATTATGGCTGAGATAAATGACAAGAATTCCTGTAAAGATAAAGAAGCAGAATTTCAAAAGATCAAAATTGAAACTGATGTTGATTTAGACAATGAGGATGAACAAATTTTTGAAACAGTAAATGATTCAATTAAGTATGAATATTTTGATGAGACAGATAAACAACTAGGGGCAGATTTTCAGGTTCAGGAACGTGCAGTTAGTACCAAGGAATGTATAACTTTTGAAACAAGCAATAAAGAGTTGTCAAATGATGATGAGAGTGAGATGTTTGAAGAATATCTCGTGGATGAAGACTATCAGGTGGATGAAGACTATCAGGTGGATGAAGAAAGAGAAGTGTGTGAGGATGTAAAACAAAGCCGGAAGAGGAAACTTGCTAAGGAGACAACTATGAGGAATCAAAGTGAAGCTTTACCCGATTGTAAGAAACCGAGAGCAGCCTTTAAAGATGCAATGTTGGGTTCGAGGAACGACAATACACAAGGTTCCAATAAACATTTTATGGCTAGTGCTGTACCTGCAAAATATATGGAGACTGTATACCTCCCACCAAGGAAGAAAGATATATTAGTAACTGTGGGACCTAAAAAGAAATACCAACGAGCTGGTATAAGCACTGATAATCCAGAAATGCTTTTCATTTGTGATATTTGTCAAACACGTTACGACGATAAGTTAATGTTAACACAACATATTATAAAGAGGCATTTAAAGTTACATTTCTGCACTTATTGTAGTTTTAAAACAAAACATAAACAAAAACTTAATACACACATCAACACTAAACACACCAAAGAGGTCTCATTCAAGTGTTCTTACTGTGATTTTGAAACGTTCCATAAAGCCTATCTTAATGTACATGTTAACGCTAAACACACTAAAAAGGTTTCTTTTAATTGTTGCCTTTGTGAATATAGAACATTTTTGAAATATAATCTCACTAGACACCTTTCCGCCAAACATGTTGAAGATCTAAATTTCAATTGTTCTTACTGTACTTTTAAAACAATTGATGAGGAGACATTGACTGATCATGTTAACACTAAGCATATTATTGTTACCAATTGTTCTTACTGTGATTATAAAGCAAAAAATAAAAAGTATCTCGATAATCATGTCAGAACTAAACACAAAAACAATACTGTTTACAATTGTTCTTTCTGTGACTTTAAAGCAACGGGTAAGAAGATTTTAAATGATCATGTTAAGACTGAACACGAGACAAAAACTGTTTTCAGTGCTTCGTACTGTGATTCTAAAAAAATTGATAGAGCAAGAAATAAAAAGTATCTCGATAATCATGTTAGAACTAAACACAAAAATAATACTGTTTTCAATTGTTCTTTCTGTGACTTTAAAGCAACGGGTAAGAAGATTTTAAATGATCATGTTAAGACTGAACACGAGATAAAGACTGTTTTCAGTGCTTCGTACTGTGATTCTAAAGCAAGGGATAAAAGTATTTTAACTGATCATGTTACCAATGAACTTGAGAAAAATCCTACTTTCAACTGTGCTCACTGTAGTTTTAAAACAATGCATGAAAATATTTTAACTGATCATATGAACACTGAGCATGAAAAAAATTCTGTTTTCAATTGTTCTCACTGTGATTTTGAAACAATGCACGAGAAGATTTTAACTGATCATATTAACACTGAACACGAGATAAATACTGATTTCAATTGTTCTTTCTGTGATTTTATAACAATGGATAAGAGTATTTTAACTGATCATTTGAACACTGAACACGAGGAAAATACTGAATTCAATTGTTCTTACTGTGATTTTGAAACAATGCACGAGAAGATTTTAACTGATCATATTAACAATGAACATGAGATAAATACTGATTTCAATTGTTCTTTCTGTGATTTTATAACAATGGATAAGAGTATTTTAACTGATCATTTGAACACTGAACACGAGGAAAATACTGAATTCAATTGTTCTTACTGTGATTTTGAAACAATGCACGAGAAGATTTTAACTGATCATATTAACACTGAACACGAGATAAGTACTGATTTCAATTGTTCTTTCTGTGATTTTATAACAATGGATAAGAGTATTTTAACTGATCATTTGAACACTGAACACGAGGAAAATACTGAATTCAATTGTTCTTACTGTGATTATAAAACAACAGATAAGAGTAATTTAACTGATCATTTGAACACTGAACACAAGGAAAATACTGAATTCAATTGTTCTTACTGTGATTATAAAACAACAGATAAGAGTAATTTAACTGATCATTTGAACACTGAACACAAGGAAAATACTGAATTCAATTGTTCTTTCTGTGATTATAAAACAACGGATAAGAGTATTTTAACTGATCATATTAACACAGAACATGAGGAAAATACTGAATTCAACTGTTCTTACTGTGATTTTAAAACAACGGATAAGAGTATTTTAACTGATCATTTAAACACTGAACACGAGGAAAATACTGAATTCAATTGTTCTTTCTGTGATTATAAAACAACGGATAAGAATATTTTAACTGATCATTTAAACACTGAACACAAGGAAAATACTGAATTCAATTGTTTCTACTGTGATTATAAAACAATGGATAAGAGTATTTTAATTGATCATTTGAACACTGAACACAAAGAAAACACTGAATTCTATTGTTCTTTCTGTGATTATAAAACAACGGATAAGAGTATTTTAACTTATCATTTGAACACTGAACACAAGGAAAACACTAAATTCAATTGTTCTTTTTGTGATTATAAAACAACGGATAAGAGTAATTTAACTGATCATTTAAACAACACTGAACACAAGGAAAATACTGAATTCAATTGTTCCTACTGTGATTATAAAACAACGGATAAGAGTATTTTAACTGATCATTTGAACACTGAACACAAGGAAAATACTGAATTCAATTGTTCTTACTGTGATTTTAAAACAATGGATAAGAAAACTCTCAATGATCATACCAAAGCAGAACACATCAAAAATACCTCGAAGGCATCTAAATATACTTCCGACCTTGAATACGAAGATTTAACTATTAGGGTCTTTATTAACGCGGGACGAGAGGAGCGCGACAGCTCTCCTCCCGCGCGTTTCCACCAGAGATGTGCAAGGATGCCTAGCGAGACATCCCTATTTCACCTCTCGTGGAAACGCAGCCTTAGGATAAGGAGTTTAAATGACAGTTATGGGCCAACAAGCATTCGCAGACGCTCCACCTGGATATCGACAATACAAGAAGGTTCCTCTTGTTTTGCGGATGCGTTGAAGATAGAAGCAGTGAACAGAAAATGCTACGGTTTCAGTTCAGCATTAATGGGATGTGAGAGGATAACGATGAGTGATATCAAATCATTAGACAAAGCAAGCAATATTACTAATGAAGGTTATAAAATTATTAGGAATGAAGAAGTGGAATTTCATGAAATTAAAACGGAAATTGATATTGATATGAATATCAAGGAAGAAATTAAAACAGAAGTCGTAGATGAAATCGATGATCCAATAAAGAATGAATTTACTGATGAACAAAGAGTGACAGATTTTCAGATACCAAAACTTGAGATTACTATCGAAGAGAATTTAAGCGATGAAGTGAAAAGTGAAAATGCTGTCTACGTCAATGAGTTTTACGAAGAAGAAAATAACTTAAATGAAGAAGTCGGTGAAGCTGTAAAGCAAAGCCTGAGGAGAAAAAAAAGGAGGGGGAGCGAAAAAAGATTGCTGTGGTTCCAGTGGACCCTGAGCAAGAACCTAGAGTTCACTGGAACCGCAGTATTAATGGATTGGAAGAGGGAGGAGGTAGATCTGTCCAACATGCGACCCGACCGGAACGCGTCAAAGACACTTGACGATCGGATTCGCATGCTGGTGGTCGCAAGCCAGTCGGGCAGCAGATCCCCTACCACCAATGCGGGTGCTGAGTTACTCGCCTCTTACGAGAGATGTTGTCCCAGCGGCAGAGGGGAATTGTATTGTAACCCGACCCCACACGGATTAAAAACATTGTGA
- Protein Sequence
- MVFKRSKKSVPPTDGDGKVKNDEEEDMVLNNESLYALEREALVEMEKLLAPHCEGVDQLITVAPDSDTVVTMEVCRACLAMNVKMYHISEHKLSIMYEQVIGVEINTEDYFPKMLCWECVARLSSANRFIEKAVKTQWILMNRTNGSRFVTMSDIESIDKEKYQLESTLGIKYYKENYSNLHIIKESNNISCNYKEIVPEVNNKDSGIEKEVEFRETKTDVDLENEYNNENMAEINNKDSGKDKEEEFHKVTTETGVDLTNECDNEIMAEVNNKDSCKDKEVQINNIKTESDFNITNECNNEIMAEINDKDSCKDKEVQINNIKTESDVDITNECNNEIMAEINDKNSCKDKEAEFQKIKIETDVDLDNEDEQIFETVNDSIKYEYFDETDKQLGADFQVQERAVSTKECITFETSNKELSNDDESEMFEEYLVDEDYQVDEDYQVDEEREVCEDVKQSRKRKLAKETTMRNQSEALPDCKKPRAAFKDAMLGSRNDNTQGSNKHFMASAVPAKYMETVYLPPRKKDILVTVGPKKKYQRAGISTDNPEMLFICDICQTRYDDKLMLTQHIIKRHLKLHFCTYCSFKTKHKQKLNTHINTKHTKEVSFKCSYCDFETFHKAYLNVHVNAKHTKKVSFNCCLCEYRTFLKYNLTRHLSAKHVEDLNFNCSYCTFKTIDEETLTDHVNTKHIIVTNCSYCDYKAKNKKYLDNHVRTKHKNNTVYNCSFCDFKATGKKILNDHVKTEHETKTVFSASYCDSKKIDRARNKKYLDNHVRTKHKNNTVFNCSFCDFKATGKKILNDHVKTEHEIKTVFSASYCDSKARDKSILTDHVTNELEKNPTFNCAHCSFKTMHENILTDHMNTEHEKNSVFNCSHCDFETMHEKILTDHINTEHEINTDFNCSFCDFITMDKSILTDHLNTEHEENTEFNCSYCDFETMHEKILTDHINNEHEINTDFNCSFCDFITMDKSILTDHLNTEHEENTEFNCSYCDFETMHEKILTDHINTEHEISTDFNCSFCDFITMDKSILTDHLNTEHEENTEFNCSYCDYKTTDKSNLTDHLNTEHKENTEFNCSYCDYKTTDKSNLTDHLNTEHKENTEFNCSFCDYKTTDKSILTDHINTEHEENTEFNCSYCDFKTTDKSILTDHLNTEHEENTEFNCSFCDYKTTDKNILTDHLNTEHKENTEFNCFYCDYKTMDKSILIDHLNTEHKENTEFYCSFCDYKTTDKSILTYHLNTEHKENTKFNCSFCDYKTTDKSNLTDHLNNTEHKENTEFNCSYCDYKTTDKSILTDHLNTEHKENTEFNCSYCDFKTMDKKTLNDHTKAEHIKNTSKASKYTSDLEYEDLTIRVFINAGREERDSSPPARFHQRCARMPSETSLFHLSWKRSLRIRSLNDSYGPTSIRRRSTWISTIQEGSSCFADALKIEAVNRKCYGFSSALMGCERITMSDIKSLDKASNITNEGYKIIRNEEVEFHEIKTEIDIDMNIKEEIKTEVVDEIDDPIKNEFTDEQRVTDFQIPKLEITIEENLSDEVKSENAVYVNEFYEEENNLNEEVGEAVKQSLRRKKRRGSEKRLLWFQWTLSKNLEFTGTAVLMDWKREEVDLSNMRPDRNASKTLDDRIRMLVVASQSGSRSPTTNAGAELLASYERCCPSGRGELYCNPTPHGLKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -