Lcam025167.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990238.1:1418779-1427282[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0003 0.027 15.6 6.0 1 23 263 286 263 286 0.96 2 11 0.009 0.8 11.0 3.1 1 19 304 322 304 326 0.88 3 11 0.00015 0.013 16.6 2.9 2 23 332 353 331 353 0.96 4 11 0.024 2.2 9.6 4.4 1 23 357 380 357 381 0.93 5 11 1.9 1.7e+02 3.6 3.7 1 23 383 406 383 406 0.94 6 11 0.00038 0.034 15.3 0.3 2 23 476 497 475 497 0.96 7 11 0.075 6.7 8.1 1.4 2 23 517 539 516 539 0.96 8 11 8.8e-07 7.9e-05 23.6 4.1 1 23 545 567 545 567 0.98 9 11 0.011 0.98 10.7 4.0 1 23 572 594 572 594 0.97 10 11 0.00046 0.041 15.0 0.9 2 23 601 623 600 623 0.94 11 11 1.5 1.4e+02 4.0 1.9 3 19 662 678 661 683 0.92
Sequence Information
- Coding Sequence
- ATGGAGAGGGAAATGTTCATAACAGACACAGACGGCGAATACCCAGTCCTGATTATACCCAAAAAGTGCACCTCATTGGAAACCAATCACGATGCCACGGACAACGTATACATCGCTGTCAACATCACTACTTTCGATACAGACGGAAACGAAATGGGAATATACTCCGGCTTCTGTAACGTCAAGGTCATTGATGACTTAGCCAGTAACGAGGTCAACCATACAGATATAGCGTACCCTTCCTCTGAGGCGAATTACCCAGGGTATACCCAGTCCCAGGTGTGGATAGATCCAGTCAGAAGTCCCTATGTGTATAATGATACAGAGGAACCTGTTCGGCATTATCAGACTCACTCGAGTCACATTACTGTTGAACACCATAATACATATATAACCCAAAATGTTTATAACTATGATGGTGAGGAGTATAGAAGGTTCAGGAAGTCAATGGGTGAGTGTCAGATTGACTCAACTGTGTGTGAGAATGATGAGCTCGAGTGTGGGTTGTTCATGACGCAGCTGCCGGAGGAGATATTGAATGAGAAGGAGAATAGATCGAAGGAGTTGAAGTACGAGGAGCTGCAGAATGAGAACGCGCTGAAGCAGCTGATGTCGTCGGATATGCAGTCGTTGTCGAAGCAGCAGAAGACCATACTGTATTTGGGACATGACTCGCATTATGGTCAAACTATACAGAAGATTGCTGTGCATGATCCGATGCTGGAGTGCGCTGATAGTGGTTATGATAATGAAGTTGTTGTGGATAGTACAAGTAACCAAAAAAGATACCAATGCGAGAAATGCAATAAAATATTCCATCGTCACGCATCCTTCAAACAACATATGAAGGGAAACCATAGACCAGCAGCCCCATCACCAGTAATCAAAATGGACCCTCAAAAAGTGAAATTCATGTGTTCAGAGTGCGGGAAATCGTTCAAAGATGTAAATAAATACGATAGACACTGCAATGGGCATGGTGACCCGGAGCTGGAGTGCAGTATCTGCCATAAAGTGTATGCTACTAAATTCACATTGAAAAACCATAAAAAACTCCATCAGAGAAAACATAAATGTAATTATTGTAAAAGGTCGTATGAGAAAGTTGAGGATTTGATGAATCATTCTGAGAAAATGCATCATATTTATAGCTGTGATTCTTGTGATTTTAAGACGACTAAGTATTGTGAGTTGGAGGATCATAAGCTAAATCGACATGCACCTGTCAACGTAATGGAGATCGAGAACGCGTTAAAGGAACACATATCAGACAGCAGCACTCTGACTCCTCCCGAGAATTTCATGGAAGATGATGATAAAGCTGAGATGATAGAAAACGCTGAGTCAGTTATAGCGAAAGTTATGTCCAACAAGATGTTTCTAACCCAAACTAAAAGGTCACGACATTATAAGAAACAGAAAAAGACATGCGACGTGTGTCTAAAGACTTTCGAGCGAATCGGCGATCTCAAGAGGCATCTAATAGAACACGTCATAAAGAGCACCCTCTCCAAAACCCCTGTCAACGGCAGCGGAACCCTTAACATACAGTGCGAGGTCTGCCACAGAGAAACCTTCAGCAAGATAGATAAATATAAAGCTCACCTACGTGAACATGCTAAACTTACGCTATACAAGTGTACGTTTTGCGACAAATCCTTCAGCGATTCGAGCAATTTCTCGAAACATAAAAAAATTCACGGTTCGACATTATTTCATTGTGATTTATGTCAACGGAAGTTTAATTCTAAGAAAATGATTACATTGCACATGGAATACCATAATAATAACGCGCCAATACCTTGCGGTTTTTGCGAAAAAAAGTTTCATTTTCCATCCACTTTGAATAAACATATAAAAGGTATTCACACACGGGAGTTATCAAGGTTTAGATGCACATTCTGTCAAGTGTACTACGATACCTTGAAAGAGAAGTGGGACCATGAATGGAAGGTCCATAATGTCAGGAAAAACATCGTTGATTGTCTAATGTGTGCGTCGAAATTTAGGAAATATTCTGAATTAAAACGACACTGCCTTGATATTCATAATTTTGAGATTCCCCCCTCCAAAAAGTTTTTGAAGAAACGAAAAGCCAGAGTGTCGTAA
- Protein Sequence
- MEREMFITDTDGEYPVLIIPKKCTSLETNHDATDNVYIAVNITTFDTDGNEMGIYSGFCNVKVIDDLASNEVNHTDIAYPSSEANYPGYTQSQVWIDPVRSPYVYNDTEEPVRHYQTHSSHITVEHHNTYITQNVYNYDGEEYRRFRKSMGECQIDSTVCENDELECGLFMTQLPEEILNEKENRSKELKYEELQNENALKQLMSSDMQSLSKQQKTILYLGHDSHYGQTIQKIAVHDPMLECADSGYDNEVVVDSTSNQKRYQCEKCNKIFHRHASFKQHMKGNHRPAAPSPVIKMDPQKVKFMCSECGKSFKDVNKYDRHCNGHGDPELECSICHKVYATKFTLKNHKKLHQRKHKCNYCKRSYEKVEDLMNHSEKMHHIYSCDSCDFKTTKYCELEDHKLNRHAPVNVMEIENALKEHISDSSTLTPPENFMEDDDKAEMIENAESVIAKVMSNKMFLTQTKRSRHYKKQKKTCDVCLKTFERIGDLKRHLIEHVIKSTLSKTPVNGSGTLNIQCEVCHRETFSKIDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGSTLFHCDLCQRKFNSKKMITLHMEYHNNNAPIPCGFCEKKFHFPSTLNKHIKGIHTRELSRFRCTFCQVYYDTLKEKWDHEWKVHNVRKNIVDCLMCASKFRKYSELKRHCLDIHNFEIPPSKKFLKKRKARVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -