Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990250.1:6037399-6044870[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0065 0.58 11.4 0.7 1 23 261 283 261 283 0.98

2 10 0.029 2.6 9.4 5.3 1 23 290 312 290 313 0.95

3 10 0.26 24 6.4 2.0 1 23 317 339 317 339 0.96

4 10 0.002 0.17 13.1 1.5 1 23 344 367 344 367 0.98

5 10 0.072 6.5 8.1 0.2 1 23 371 394 371 394 0.87

6 10 0.041 3.7 8.9 1.0 2 23 471 493 470 493 0.96

7 10 0.0032 0.29 12.4 0.8 2 20 509 527 508 530 0.91

8 10 0.029 2.5 9.4 0.2 1 23 536 558 536 558 0.96

9 10 8.1e-07 7.3e-05 23.7 1.1 1 23 565 587 565 587 0.98

10 10 0.00068 0.06 14.5 4.3 1 23 593 616 593 616 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0065	0.58	11.4	0.7	1	23	261	283	261	283	0.98
2	10	0.029	2.6	9.4	5.3	1	23	290	312	290	313	0.95
3	10	0.26	24	6.4	2.0	1	23	317	339	317	339	0.96
4	10	0.002	0.17	13.1	1.5	1	23	344	367	344	367	0.98
5	10	0.072	6.5	8.1	0.2	1	23	371	394	371	394	0.87
6	10	0.041	3.7	8.9	1.0	2	23	471	493	470	493	0.96
7	10	0.0032	0.29	12.4	0.8	2	20	509	527	508	530	0.91
8	10	0.029	2.5	9.4	0.2	1	23	536	558	536	558	0.96
9	10	8.1e-07	7.3e-05	23.7	1.1	1	23	565	587	565	587	0.98
10	10	0.00068	0.06	14.5	4.3	1	23	593	616	593	616	0.93

Sequence Information

Coding Sequence: ATGTGTCTTGCGACAGGAGTTAAGTTATTTAATATAAAAAAACGTAACCTAGAGGAGGCCTACAAACTACTTACCGGAATCATGCCATTTAACGAGACTTTACCGCATCTATTATGTGTGGAGTGTACACAGAGGTTAATCAATTATGATAAATTAAGAGAAAAAAGTTTGAAGGCTCATTCCTTATTGATGGAATTGATACAAATGGACAAAGTTATTAGTATAGAAAGCCTTTTATACCTCTACCGTCAACAAAATGACTTAAACTCAACATTAAATCCAAAAACATTCGAAACAGACCACTGCGACTTAAGAATTAGTGAATACGAACGGACAACACAAGATATAGATGTCAAAAGTGAAGACGAGGACATTCTGCAAACAGATATAGCTGTTGATTACTCTACAGATGATAACTTACCTTTGGCGACTAAAAAAAAAAAAGTAAACGATACAGAAGCAGAAATGGAACCTAAAATAGATGTTGATTTAAATGATTGCTTTGAACAAACAGACATACAAACAGAAAATGACGTAGTTAAGATTGAAGATGATGTTTTTGTAGATACAGATGATAGTTTACCTTTGGCTCCAGTAAAAAAAAGGAGGAAGGTTAAAAAGAAGGTAAAGGAGATGGAGCCGAAGATAGATAGGAGGAGGAAGCCGTTTTTAAATGGGAATTTAAAGGAGTCGCTGTTTACGATAACTGATTTGACAGTTGATGAGCAAATGGCGGAGATTGAGAAGAGGAGGGAGTCTTCTAATTATAAGAATTCCATGTTTAAGTGTAAGGAGTGCTTTAAGGGGTTTTTGGATGAGGAGGCTTATAATAGTCATATACTGCGGCATACAAATAAATGTGGTGAATACGAATGTTATATATGTAAAATACACTTCAAACATCCGACAGCGCAACGGAAACACATCACAGCTCATCACACGCAGAGGTTCAATTGCAACCAGTGCCCTTACGAAACCACTCACAGACAAACAGCGAGGTTACATGAGAGATGGCACAAAGGAACACAATACCAATGTCCGCATTGCAATGATGTGTTTGTTAAATTCTCAACATACATGGGACATATACGCATAAAGCATCCGTCCGACTTCGTCTGCGCGTTGTGCGGGTACTCCTTCGTCAGCGAGAAGGGTATCGACTTGCACAAGAAGTTGAAACATCGCTTGGACGATAAATTGATACCGGAAGACGGTCCGCTGTGTGAGCCGTGTAATGTTCGGTTCCAGTCCGAGGAGGCCTACCAGCAGCATCTGCACGTCTCTGCCAGGCATAACAATCGCGACAATGAATCCAAGGAAAGAAGAAGGAGAAGACCAAGAGAGCCCCAAGAAGACAATGACAAGAGAAAGAATTATCCACAGAGATTCCAGAAGGTTGAAGGTCCAATACCATGTGAACAGTGTGGCCAGCAACTAAAAGACTCGAGAGCGTACCACAGCCACTTCAGGCGGGTGCACCCGGACAAGAACCGCACCATCTACCCCTCCATGAAGTCTCCCTGCATGTGCGAGGTCTGCGGGAAGATGTTCCAGAGCTACGCGTTGCTTAAGGACCACCGCTGGGTTCACACGGGCGAGCGGCCCTTCGCGTGCGAGGCGTGCGGCAAGGCGTTCGGCATGCGGCAGCGCCTCGTGGCGCACCGGCACGTGCACAGCGAGCTGCGCGCCACCTACCGCTGCGCGCTCTGCGACAAGACCTTCAGCTCGCAGAGCAACCGCCAGCGACACATGGTGGTCCACACGGGGCTGAAGCCGTTCAAGTGCGAGATGTGCGGCAAGTGCTTCAAGCACGTGAGCGAGAAGCGCGCGCACGTCACCTACGTGCACCTCAAGAAGCCCTGGCCGAAGCGGGCGCGCGCCAAGCGGCGGGAAGCCCCTGTACAAGTGCAGCCAATCAGTGATATAGATGGCAACCCTAGTGACGCACACATGGACACGTGGCCGGACAAACAAGTGATATATCATTTGAAGATGTAG
Protein Sequence: MCLATGVKLFNIKKRNLEEAYKLLTGIMPFNETLPHLLCVECTQRLINYDKLREKSLKAHSLLMELIQMDKVISIESLLYLYRQQNDLNSTLNPKTFETDHCDLRISEYERTTQDIDVKSEDEDILQTDIAVDYSTDDNLPLATKKKKVNDTEAEMEPKIDVDLNDCFEQTDIQTENDVVKIEDDVFVDTDDSLPLAPVKKRRKVKKKVKEMEPKIDRRRKPFLNGNLKESLFTITDLTVDEQMAEIEKRRESSNYKNSMFKCKECFKGFLDEEAYNSHILRHTNKCGEYECYICKIHFKHPTAQRKHITAHHTQRFNCNQCPYETTHRQTARLHERWHKGTQYQCPHCNDVFVKFSTYMGHIRIKHPSDFVCALCGYSFVSEKGIDLHKKLKHRLDDKLIPEDGPLCEPCNVRFQSEEAYQQHLHVSARHNNRDNESKERRRRRPREPQEDNDKRKNYPQRFQKVEGPIPCEQCGQQLKDSRAYHSHFRRVHPDKNRTIYPSMKSPCMCEVCGKMFQSYALLKDHRWVHTGERPFACEACGKAFGMRQRLVAHRHVHSELRATYRCALCDKTFSSQSNRQRHMVVHTGLKPFKCEMCGKCFKHVSEKRAHVTYVHLKKPWPKRARAKRREAPVQVQPISDIDGNPSDAHMDTWPDKQVIYHLKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -