Lcam015826.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:6164628-6168192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.48 43 5.5 0.9 1 23 191 214 191 214 0.94 2 9 3.9 3.5e+02 2.7 1.3 2 23 239 261 238 261 0.89 3 9 0.18 16 6.8 5.3 1 23 280 302 280 302 0.97 4 9 4.6e-05 0.0041 18.2 1.2 1 23 306 328 306 328 0.98 5 9 0.00016 0.014 16.5 0.2 1 23 333 355 333 355 0.98 6 9 0.61 54 5.2 1.5 2 23 361 383 360 383 0.93 7 9 0.00014 0.013 16.7 1.6 1 23 389 412 389 412 0.97 8 9 1e-05 0.00093 20.2 1.6 2 23 418 439 417 439 0.97 9 9 8e-05 0.0071 17.4 3.2 1 23 445 467 445 467 0.98
Sequence Information
- Coding Sequence
- ATGGACTTTATAGATATAACGTGGGTTAGTCAGCCAAATGTTTGTAGATGTTGCTTATCAGCAAACGGTGTATTGGATCTGACAGAGACGTATATCAGTGATGATGGGATAGAGGAAGTTTTTATTGATATCTTTCGGGATTATTTGGGTATTTCTATATCACTCGTCGACAGTGATGCGAGCAAGCTGATATGTGTAGTATGTATCGAAAGCCTCAGAAGTGCATCAAAATTTCATAAACAAGTGACTGAAGCTGACAAATGTTTTAACAACTACTGGAATAGAAAAAAAGATAATGCCAATAATGAATCTAATAACAATGACAAAATTATAGAAAGAGAAGAGAAAGACGAAAGTCATTTTGGAGACTACGATTCTGATACACCTATTGCTAAATACAAAACCTATGAAAATGACCTTAAAGGTCTAGATAAGGGTCAAAATGAAATAATTGTGTTACCAAAATTAATCAATGAAAAACAAGTATCTGAGAGGAAGCGGGTAATATTAACATGCAACACTGTCCTTAAAGATACAACAGCTTGTCCATTCCGACACCACAAGAGCTGGTTCCAGTGCTTCTTCTGCCCTTTAGATTTCATGGAAATAAACACACTACGAACTCACACACTTCAATCTCATGTGGACATAGAGAATGAGTTAAAAAAAATAAAACGTTACCCACGTTCCCTCCAAATTGATATTTCAAATTTGGAATGCCGCAACTGTCACTTGGATTTGACAGATATTGAAACTATGAAACGGCATTTCTTGGAGAAACACAATAAAGTAATTTACAAAGAGTGTATAGCAGATTATAAAGTGGATTCCAGTCCTTTTAGCTGTCATTTGTGTAAAATGGAATTTCATGTTTTTAGGACGTTAACGACTCATTTAAATGAGCATTACGCGAATTATATTTGCGATGTTTGTGGTAAATCGTTTCTCAATTCAAAACGTTTGAAGGTACACAAACGTACACACGAAAATGGCTCCTATCCCTGTACGGAATGTGGAAAAGTGCTTAAAACCAAAATATCTAAAGCGAATCACATGGAAAGCCATTCAAAACGTGTGATTAAATGTCAAATATGTTTTAAACCCATGAAACATTACAATGACAGAATTAAACACATGTCCGAAGTACACAACATCACTCATAAGTTCACTTGTCCAATTTGCAATCGTGAATATAATATAAAACATTATCTGGCAACACATATACGTCAGACTCATGGTAATAAGAATAAGAAGTGTTTGGAGTGTGGTATGGCGTTTATAACCAACCATGGATTGAAGAAACACATGTTGAGACACACCGGGGATAGACCGTTCTCTTGTACTGTTTGTTGTAAGTCGTATGCGAGGAGTTACAGTTTGAGAGAACATATGAGGGTACATGAAAATGATAAAAGAGTTGTTACTCCGCCATAG
- Protein Sequence
- MDFIDITWVSQPNVCRCCLSANGVLDLTETYISDDGIEEVFIDIFRDYLGISISLVDSDASKLICVVCIESLRSASKFHKQVTEADKCFNNYWNRKKDNANNESNNNDKIIEREEKDESHFGDYDSDTPIAKYKTYENDLKGLDKGQNEIIVLPKLINEKQVSERKRVILTCNTVLKDTTACPFRHHKSWFQCFFCPLDFMEINTLRTHTLQSHVDIENELKKIKRYPRSLQIDISNLECRNCHLDLTDIETMKRHFLEKHNKVIYKECIADYKVDSSPFSCHLCKMEFHVFRTLTTHLNEHYANYICDVCGKSFLNSKRLKVHKRTHENGSYPCTECGKVLKTKISKANHMESHSKRVIKCQICFKPMKHYNDRIKHMSEVHNITHKFTCPICNREYNIKHYLATHIRQTHGNKNKKCLECGMAFITNHGLKKHMLRHTGDRPFSCTVCCKSYARSYSLREHMRVHENDKRVVTPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -