Lcam010854.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Limenitis camilla
Gene Symbol
Prdm1
Assembly
GCA_905147385.1
Location
LR990230.1:7912632-7917385[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.3e-05 0.0029 18.6 2.5 1 23 804 826 804 826 0.99
2 5 3.6e-06 0.00032 21.7 5.0 1 23 832 854 832 854 0.98
3 5 2e-06 0.00018 22.4 4.3 1 23 860 882 860 882 0.98
4 5 0.066 5.9 8.2 3.1 1 23 888 910 888 910 0.97
5 5 0.00012 0.01 16.9 0.1 1 22 916 937 916 937 0.96

Sequence Information

Coding Sequence
ATGAGGCTGTCAACAAGTGAAGAAATCCCTTCGACGACGGTGGGGCGTACAGCAAGTCCGATCACGGGCCCTGTTGGTGCCGTGGCCGTGACAGAGTCATACGATGTAACACGCATGCGCGAAGAAGAATTCGAAAGGCTTACAGTATACATAGTTCCCGATGTGCCGTGTGAACGAGGAGTTTCCAACAGAGCAGAAAGAACACTCCCGCGCAGTCTGGCGCTCAGACCGTCTGCAGTACTATCTACTCCAAATACACCGACTGAGGGCGTATGGAGCACAGGAGTTATTCCACGTGGTACAAGATTTGGTCCATTTGAAGGAACGCGAACACCGAATAAACCTAATGACAAAGTTTCTTGGCGGTATTATTGGAGGGTACAAGAAACGGTCAGGCATCATACTTACGGAAACATCAAGATATTCAAAGACAGTGATTATTATTACCTGGATGGATCGGATACTAGCGTTGCAAACTGGATGCGATACGTGGCTTCAGCATATTCCCTCTCCGTAATGAATCTCGTCGCATGTCAACACCAAGAACACATTTATTTTTACACGATTAGGGATATTATGCCAAACGAAGAACTCATGGTATGGTATTGCAAAGATTTCGCAACTAGACTCGGATATGATATCGATCCCGAAAGAGCAACTTATTCTATATGTAAAGAAGAAACTATAAAAAAGGCTTATGGCTTGCCACCTGCACCAGTGCATCCAGAAATTGCTTTTAACCACATGAAATACGTTCTCGGTCTTTCAAATGCTAAAGATATTTTAGAAGCCGAAATTCCTAACAGACGAAGAAAACGTGAAGCGAGTGATAAACAACTTCATGAAAACAATAACCTTCAGCTACGAGACGATCCACGGAACTTGACTAAAAATGAAAGATCAAATGTAAGGACAGATATGCCGTCAAATGTAATTCACCAAAAACATGATTTAATAATTAATGAACATCCTTCACTATCGCCTAGTAATGTTATGCAGCCTCCTTCACCAGTGAAAGCACATCATAGGGACAATCAAACTTTAATAATACAACATAAAGAAAGCACATCGCACGTGATTATTCATCAACATGACAACCCAAGACATTATAGTAATCGATCACCTGCCCAAAATGTTCTCATTCGAGATATTCGAGGACCCTCTCCTATGGCACCAAATGGTTCTGATAAACTTGGAAGTAAATCCCCTAGTTTTAGTCATTGTGTACCAAGTCATTATGAACATCAGCTAACACCAAACGATGGTTCAGTTAGATCAGATGAAGGCTACCACAGCAATGGCTATCATGACGATTTTACCCCACCTGAAGACTCAAGCGACTCAGATGTAGAAAACTATGTATTAGATTGCTCAAATAAAACAAACGAGCCAAAAGAAACTGTAATAGTTCAAAAAATAGACCAAGACATGCACCGAAACGAATATAGGAAAGTTAAAATAAAAATGCCAAGAGCATACGCTCTTAATAAAGATATGGACTGCGAAAGTGAAAAGGAATTAATGATAGCGGAAGAAGGAATTATTATTTCTGCTCAAAGTGTATCACCTCCTCGTCGTGATCCAGCTACATCTACAGTTATCGTGTTGGAATCCTCTCAAAATACTGTTTTACCAATAAGCAAACCCTACTATGAGGATGGAACAGTGTCACCCACACCTCAACCTGCATTCATGAGATATTCGCCTCCAGATACTCGGATTCTCGAAACTATTCTTACAGGAAATAGAATTGATACAAATAATAATGATCCTAGCCGCAGGCAACCAAATGCTACACCTCCACCCTCATCACCAACAGAAATGGCATATTCGTACAAAAAAAGCCAAAGGTATGGCAACGCCTGTAGTCCTGATTCCAGTTCAAATTTAACACCTTTGCCGTCTTTGCTACCATTACCACAACAGTTACCAGCGCCTAATTCAGTATCCGTTTACTCTTCATCCCCTCCACATTCAATTCCGCACACTACCGAAATCCGTGAAATAAGAGAGATCAGAGAAATAAGAGAGACCCGATACGAAAGCCATTATCCCAATTATTCATACAGCTTATATTCGCCACCTAATTCAACAATTATAACGCAGCTAGGATCACCTCCCACTACCTATTCTCCAGTTTCTTCTTCACATCAATACGAGAGAAGTCAAAACGGCCAGAATAATCATCATTTTCCGTCCTCAACGAGCGTTATAACGCTGAAAAATTGTTCACAATTAAGTTTGATACAAAATTCTAATGTGAACGGTCAGATGATGCCACAACATAGTAGTATAAGCCCAGACGGCACATGCAGTATAATCGGTGCACCAATGAGTCCCAATTCACAATCTTCACGCGGCTATAGAAGTTTGCCTTACCCCTTAAAAAAGAAAGACGGAAAAATGCATTACGAATGCAACGTGTGCTGTAAAACGTTTGGTCAACTATCCAATCTGAAAGTTCACTTAAGGACACATTCAGGCGAGCGGCCCTTTAAGTGTAATGTATGTAATAAATCTTTTACACAATTGGCTCACCTACAAAAACATCATCTGGTACATACGGGTGAAAAGCCTCATCAATGCGATATATGCAAGAAAAGATTCTCATCGACGTCAAACTTGAAAACACATTTACGTTTACACTCAGGCCAGAAGCCTTATGCTTGTGATTTATGTATGCAAAAGTTTACTCAATTTGTGCACCTAAAACTACACAAACGATTACATACAAACGATCGTCCTTACGTCTGTCAGGGATGTGACAAGAAATATATCAGCGCATCAGGTTTACGCACTCACTGGAAAACCACAAGCTGCAAACCAAATAACATCGAAGAAGTTCTAGCCATCACCAATGCCGCGAACACTGAATGTATTGGTACTGTCGACAAAGACTGCCATGAAAGAGAGGGGCTCGAGGCATATGAAGTGCACTCCGCCTCGCAAGGAGGTCTGGTGGGAGCCGGTGGGGCACGAGTGGCGATGTCGCACGACTCTCTGATGGGAGGGCAAGCGCATTCTACGACACCACATCTGGCCATAGGACACGGACAACTCTCTCCAGGTTCGGCGAGCCACTATCGAGCGCTTCTACCTGGAGGCTCCGAGCACGAGCCGCAGCACTACGGGTCGGTCGGCGGCGAGACCCGACCCAGCGTCATAGAGTCCAACCAACCTCTAATTATCGAGTGCACCTGA
Protein Sequence
MRLSTSEEIPSTTVGRTASPITGPVGAVAVTESYDVTRMREEEFERLTVYIVPDVPCERGVSNRAERTLPRSLALRPSAVLSTPNTPTEGVWSTGVIPRGTRFGPFEGTRTPNKPNDKVSWRYYWRVQETVRHHTYGNIKIFKDSDYYYLDGSDTSVANWMRYVASAYSLSVMNLVACQHQEHIYFYTIRDIMPNEELMVWYCKDFATRLGYDIDPERATYSICKEETIKKAYGLPPAPVHPEIAFNHMKYVLGLSNAKDILEAEIPNRRRKREASDKQLHENNNLQLRDDPRNLTKNERSNVRTDMPSNVIHQKHDLIINEHPSLSPSNVMQPPSPVKAHHRDNQTLIIQHKESTSHVIIHQHDNPRHYSNRSPAQNVLIRDIRGPSPMAPNGSDKLGSKSPSFSHCVPSHYEHQLTPNDGSVRSDEGYHSNGYHDDFTPPEDSSDSDVENYVLDCSNKTNEPKETVIVQKIDQDMHRNEYRKVKIKMPRAYALNKDMDCESEKELMIAEEGIIISAQSVSPPRRDPATSTVIVLESSQNTVLPISKPYYEDGTVSPTPQPAFMRYSPPDTRILETILTGNRIDTNNNDPSRRQPNATPPPSSPTEMAYSYKKSQRYGNACSPDSSSNLTPLPSLLPLPQQLPAPNSVSVYSSSPPHSIPHTTEIREIREIREIRETRYESHYPNYSYSLYSPPNSTIITQLGSPPTTYSPVSSSHQYERSQNGQNNHHFPSSTSVITLKNCSQLSLIQNSNVNGQMMPQHSSISPDGTCSIIGAPMSPNSQSSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCNKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCMQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNIEEVLAITNAANTECIGTVDKDCHEREGLEAYEVHSASQGGLVGAGGARVAMSHDSLMGGQAHSTTPHLAIGHGQLSPGSASHYRALLPGGSEHEPQHYGSVGGETRPSVIESNQPLIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01429430;
90% Identity
iTF_00843861;
80% Identity
-