Lcam008068.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990248.1:7851836-7859257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.6e-06 0.00023 22.1 1.1 1 23 254 276 254 276 0.98 2 10 0.13 11 7.4 2.1 1 23 284 307 284 307 0.94 3 10 0.00019 0.017 16.3 2.5 1 23 400 422 400 422 0.99 4 10 0.2 18 6.7 1.2 1 23 457 479 457 479 0.95 5 10 0.00051 0.046 14.9 1.7 1 23 484 507 484 507 0.97 6 10 0.01 0.9 10.8 1.8 3 23 513 534 512 534 0.95 7 10 2.5 2.2e+02 3.3 0.0 2 20 553 571 552 573 0.92 8 10 5.4e-06 0.00048 21.1 1.1 1 23 654 676 654 676 0.98 9 10 0.0003 0.027 15.6 1.0 1 23 682 704 682 704 0.96 10 10 7.9e-05 0.007 17.4 4.9 1 23 710 733 710 733 0.98
Sequence Information
- Coding Sequence
- ATGTTCGACTTAAAGGCGTGTACGGTGTGTTTAAAAACTAATGTTAAAGTATATAATTTGAATACAGATCAGTTAAGACATGAATATAATTTGGTGTCTGGTTTGATGACATACACACAAAATGGTCTGCCTGAGTATTTGTGTTATCAATGTGTGGCTTATGTTAGAAACTTTAAAAAGTTTCGTGATAAATGTCAACATGCATATTATACATTACGAGAAGTATTTGAAAAACATAAAAAGATAACCCAGTCTGTAGTTGAAGAATTAAGTCAGAATGTAGCGAACATTGAACCTATAATCTCGTATTTGACACCAGATCATTTTAGAACAAGGTTTGAACATATTAAATCAAAATCTAAAAAACATCGACACATAGACAGACAATTCACAGAACATGATGATAATATTCCTATTATCCACTTTGCTACTACTTCCAACAAGTTAATATTTGAAGTACCTAAGAAAAAACAAAAAGTATGGGTGGATCATGAAATGGAAAATAGTATAAAACAAGAAGATGTAAAAAATGATGAAACTTTTGCAGATGTTTTGACTGATTTAGATGATAAGAAAAATGATGATTTTTTTGACTTTGATTGTGACACGCAAATTGATTTTGATGATTCGGAATCAAAGACTGATCAAACAGTAGACCAAAATGGGAGTTTAGAGGAAGAGTATGCTACTTTGGTTCCAATATCTACTAATGAGGCGAAGGCTGCTGTTGAAGTTTATAAAATGCTCTTTCAAGGAAAGTTTTCATGTGAAGTGTGTCAGAAGACTTATAACAGTCAGTACCGACTTGAGGCTCATATGCGAATGCATGATATGTGTATAAGTGGAACATTTTCGTGTTCTCTATGTAAGTTTTACTACAGATCTGAATTACTATTGAAATCTCATATGACAGAAAAACACATGTACAAATATTTATGTAAAAAATGCCCTGAAGTTAATTTTGATAGACATTCAGCAAAACGACATTATTATTGGGGACATTTCACAGAAATCTCCCAAAAACAAACATCCACAAGACTCACAAAAGGGAGGCGGAAACATAAGTCAGCTATACGACAATTAGAACCTAGGACTAGTGACCCGGATGACTTTCCAATGCTCTCTGCTATAAGTCAGGAAGAACAATATGCTTTGATACGGGACAGACAGAAGACTAAGAACTATATTGATTCACCATATAAGTGTGAATATTGCTTTAAAGGTTTCAGGGTGGCTACAACATTTGAGACTCATTTAAAAAAGCATGATCCCAAAATATCAGGGCAGCTGCAGTGTGATGCTTGCAAGACGTACTGCCCCAACACGGCCAAGATGTACAAGCACATGACTCGTTGTCACATCTTTAAGTATACATGTCAAATGTGTGGTTATGTGTGCCTTAGCAGGGGTCAAGCAAAAATCCATTACAATTGGCATAAAAAAGTTATTTATCCATGTCCACATTGTCAAAAGGAATTTTCGAAAGAATCCACGAAGTTGGGTCACATCCGTAAAATGCATCCTTCGACGAACATCTGCAATATTTGTGGGCACAGTTTCGTCAGTGTCACTGGTTTACATATACACAAGTTGAAAACTCATAGCAAAGAGGAGGTAGAAGGGAATCAAGTGAAAGTAGACCCGACGAACCCGTTGTACTGCGCCGAGTGCCGCGTGCAGTTCCGGGACGGGGAGGCCTTCACCATACACTTGGGATCTTCCAATAAACACGCTGATACTAATCGCTCAATGATCCAAGCGAACATCGAAAGCTCCTACGACACGAAGGGCGCAGGGCCACGCGAGTACGGCGGCCCACGGCTCACAGACAAGGGAGTCGTCAACATGGGACGAGCTACTTCATCTAACTGTGAAATTTGTAATAAGTACCTACTGAACGACACACAAGCGACGCGCCACTACGACACGGAGCACCCCGGTGCGCCCTACCTTAAACGCTACATGTGTGATATTTGTGGACATAAAACACGCCAATACGCTAATCTCGTAGTGCATATGCGTACGCATACGCAGGAGAAGCCCTACGCGTGCCCGCACTGTGACCGACGCTTCAGCATGCAGAACAACCGTGACAGACATATTGTTGTACATACTGGCGAAAAACGCTACCACTGTCCCCACTGTAACCGTCGCTTCTCACAGAAAAACACGGTCAAGCTCCACATCCAGACCGTCCACCTCAAGATACCCTACCCTCCCTGGAACAAGAAGAACAGGAAGCGGAGAGACATCGAGCCTCCACCTTCGCCTGTGCCTGCGCCTGCAGTGCGCGGGGACTATCTCAGCGCCTTCATTGACACAACTAGTAAAGCTTGTGCTAATTAA
- Protein Sequence
- MFDLKACTVCLKTNVKVYNLNTDQLRHEYNLVSGLMTYTQNGLPEYLCYQCVAYVRNFKKFRDKCQHAYYTLREVFEKHKKITQSVVEELSQNVANIEPIISYLTPDHFRTRFEHIKSKSKKHRHIDRQFTEHDDNIPIIHFATTSNKLIFEVPKKKQKVWVDHEMENSIKQEDVKNDETFADVLTDLDDKKNDDFFDFDCDTQIDFDDSESKTDQTVDQNGSLEEEYATLVPISTNEAKAAVEVYKMLFQGKFSCEVCQKTYNSQYRLEAHMRMHDMCISGTFSCSLCKFYYRSELLLKSHMTEKHMYKYLCKKCPEVNFDRHSAKRHYYWGHFTEISQKQTSTRLTKGRRKHKSAIRQLEPRTSDPDDFPMLSAISQEEQYALIRDRQKTKNYIDSPYKCEYCFKGFRVATTFETHLKKHDPKISGQLQCDACKTYCPNTAKMYKHMTRCHIFKYTCQMCGYVCLSRGQAKIHYNWHKKVIYPCPHCQKEFSKESTKLGHIRKMHPSTNICNICGHSFVSVTGLHIHKLKTHSKEEVEGNQVKVDPTNPLYCAECRVQFRDGEAFTIHLGSSNKHADTNRSMIQANIESSYDTKGAGPREYGGPRLTDKGVVNMGRATSSNCEICNKYLLNDTQATRHYDTEHPGAPYLKRYMCDICGHKTRQYANLVVHMRTHTQEKPYACPHCDRRFSMQNNRDRHIVVHTGEKRYHCPHCNRRFSQKNTVKLHIQTVHLKIPYPPWNKKNRKRRDIEPPPSPVPAPAVRGDYLSAFIDTTSKACAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00780543;
- 90% Identity
- -
- 80% Identity
- -