Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990253.1:6031311-6032126[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1 1e+02 4.4 0.2 3 23 32 53 31 53 0.93

2 8 0.03 2.6 9.3 0.1 1 23 77 99 77 99 0.96

3 8 8.3e-05 0.0074 17.4 0.2 1 23 103 125 103 125 0.98

4 8 0.00031 0.028 15.6 2.0 1 23 130 153 130 153 0.95

5 8 0.0031 0.28 12.4 0.3 2 23 160 182 160 182 0.92

6 8 0.014 1.2 10.4 6.4 1 23 189 212 189 212 0.96

7 8 0.00055 0.049 14.8 5.5 1 23 218 240 218 240 0.97

8 8 7.2e-05 0.0064 17.6 2.0 1 23 246 268 246 268 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1	1e+02	4.4	0.2	3	23	32	53	31	53	0.93
2	8	0.03	2.6	9.3	0.1	1	23	77	99	77	99	0.96
3	8	8.3e-05	0.0074	17.4	0.2	1	23	103	125	103	125	0.98
4	8	0.00031	0.028	15.6	2.0	1	23	130	153	130	153	0.95
5	8	0.0031	0.28	12.4	0.3	2	23	160	182	160	182	0.92
6	8	0.014	1.2	10.4	6.4	1	23	189	212	189	212	0.96
7	8	0.00055	0.049	14.8	5.5	1	23	218	240	218	240	0.97
8	8	7.2e-05	0.0064	17.6	2.0	1	23	246	268	246	268	0.98

Sequence Information

Coding Sequence: ATGAATGAAACTCATACTACGTTCACGCCATTAAAAAGATTACTTAATAATAGAAGAGAAAATGTCCTAAAAGTCGATGTCGGTGAATTACTATGTAAATTGTGTCCAGTCAAACCTAAAAGCTTACAAGAACTTAAGATCCATCTAAAGGAAGACCATAAGAAACCTATAGATCCAACCTTACAAGACAATATGATACCATTTAAATTAGAGGAAGAAGAAGGTTCGTACAAATGTGTAATTTGTGAGGAAATGTTTATAAAAGTGCGGATTCTTGTAATACATATGAGTGTACACTTTAATAATTATAGTTGTGAAATCTGCGGATCTGGTTTTATGACATTACGTCTTTTAAAGAAGCATTTAGAAGTTCATGAAACTGGTAACTTTCCATGTGATAAATGCAACAAAGTGTTCAGCACTACCCACAAAAGATCTTTACATATACGAGGTGTCCATCTTAAGCAGTATCCGCGCCGTTGTCCAATATGTCCCGAGCGGTTTAATTCTAATTATAGACGAACAATCCATCTCCAAGATGTCCACAATCAGTCGACAAGAGTTCACAAATGTGAGACTTGTGGTAGAGGCTTTAATTTGAAGTATCATCTCATATGTCACACTCGATCTGTACATCTACAAGAGAGAAACCACCAATGCAAAGTTTGTATGCAACGTTTCTGTAATAAAGAAACTTTGAAACGTCACATGGTTATTCATACGGGGGAGAAGAATCACAAATGTGATTTATGCGGTATGGCGTTCCTACGACGAAAGAATTTGAAAGACCATTTGCGTCTACATGAAGTAGTTTAA
Protein Sequence: MNETHTTFTPLKRLLNNRRENVLKVDVGELLCKLCPVKPKSLQELKIHLKEDHKKPIDPTLQDNMIPFKLEEEEGSYKCVICEEMFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDKCNKVFSTTHKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNHQCKVCMQRFCNKETLKRHMVIHTGEKNHKCDLCGMAFLRRKNLKDHLRLHEVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01508431;
90% Identity: iTF_00248449;
80% Identity: -