Basic Information

Insect: Limenitis camilla
Gene Symbol: PRDM5
Assembly: GCA_905147385.1
Location: LR990250.1:4524320-4536545[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.28 25 6.3 2.0 1 23 201 224 201 224 0.97

2 11 0.069 6.1 8.2 1.1 2 23 232 253 231 253 0.97

3 11 0.045 4 8.8 0.9 1 23 257 280 257 280 0.95

4 11 0.06 5.4 8.4 1.8 1 23 287 309 287 309 0.97

5 11 0.00034 0.03 15.5 1.5 2 23 315 337 314 337 0.96

6 11 1.3e-05 0.0011 19.9 0.1 1 23 344 366 344 366 0.98

7 11 0.27 24 6.3 4.3 6 23 377 394 377 394 0.99

8 11 0.005 0.45 11.8 0.5 1 23 405 428 405 428 0.94

9 11 0.001 0.089 14.0 3.8 1 21 434 454 434 457 0.89

10 11 0.00013 0.012 16.8 1.3 3 23 468 488 467 488 0.98

11 11 0.18 16 6.8 0.1 2 23 495 517 494 517 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.28	25	6.3	2.0	1	23	201	224	201	224	0.97
2	11	0.069	6.1	8.2	1.1	2	23	232	253	231	253	0.97
3	11	0.045	4	8.8	0.9	1	23	257	280	257	280	0.95
4	11	0.06	5.4	8.4	1.8	1	23	287	309	287	309	0.97
5	11	0.00034	0.03	15.5	1.5	2	23	315	337	314	337	0.96
6	11	1.3e-05	0.0011	19.9	0.1	1	23	344	366	344	366	0.98
7	11	0.27	24	6.3	4.3	6	23	377	394	377	394	0.99
8	11	0.005	0.45	11.8	0.5	1	23	405	428	405	428	0.94
9	11	0.001	0.089	14.0	3.8	1	21	434	454	434	457	0.89
10	11	0.00013	0.012	16.8	1.3	3	23	468	488	467	488	0.98
11	11	0.18	16	6.8	0.1	2	23	495	517	494	517	0.92

Sequence Information

Coding Sequence: ATGGCGCAGTTATTACAACGTCTAGATTACAGTTCAGATGAAAGAAGTAAAATCAACGATGCAGTTTGTATTTGTTGTCTCGCTAAAAACGTGCAATTTGTGAATCTATCGAATTGTAAACATGTTCATATATTTTCGATGCTAATAGATTCTAAGGTAGAATTGAATTATATACTCTGTTACTCTTGTCATCATTTTCTAAAGAAGATAGAAGAATTTAAAACTCAAGTTCAAAATAGTATAAAAGTATTGAATAATAGTACTATACAACCTAAATACAGATCTCATAAAGAACTTCAGTTTTCAAAAATAGAATTAAATTCAGCCATTAACTCTAAATCAATAGATGTAGATTATATAGAAAATAATTTAAATGAAACACAATTCAAATTTGGAACATTCGACACTGAAATCAAAATTGAACATGATTTTGATTATGAGGAAACTCCGGAAATACAAATTAAGAAGAAGAAAAGAGAGAGTCGGGTAACTATGGAAAAGAAGTACGAGGGAGTGATAAAAAAAATTGAGTTGTCTATGGAAGAGATGATGGCGGAGAGGAAGGAGGAGATGGAGAAGAAGAGTTACTTGAATTTGCCGTACAAATGTGATTTTTGTATTACCGCTTTTGATCATGAACTGACTTTTAAGGATCACATGGAGATGAGACATAAAAAGAGACCTCGAGGCATTACTTGCAAGATCTGTAACTCAATTCTGAGCACTAAGACATCCTATGATGAGCATTATAAGAGACATTTTAGACGATACGAGTGTGTGGAGTGTGGCATCAAATACCATAATGTGTACTCTGTGCTGAAGCATTACAATGAGAATCATGGACGTATTGTAACACAGTTTAGTTGTGATTTGTGTGATTTTACAACTGAATCAAATCGAGCTTATCGATATCATCGGGATAAACATAGATCAGGAAAAGTGGAATGTGACAAATGTGGTAAAACATTTGTTTGTAACACTGGCTTGAGGAATCATATGTTCACAATTCACAGTCAATCCAACAGAGTATACTCATGCACAATATGTGATAAAGTGTACCGAGCCAAGTCTGGCCTAGCAGCTCACTTGGCTAAGCACGGCCCGAGTAATCCAGCTTACTGCATCCCATGCAAGACTCATTTCAGCAGCGAGATGGGGTTGAAGCACCATCTTAAGACGCATTCCAAACATGTGTCTGATAGTGATAAACCATTTACTTGCAATGAATGCAGTTTAAAATTCCTAACCAAGAGATCATTACAAGAACACATAGACTGGGTACACTTGAACAAGACTGAACATGCTTGCTCTAAATGTCCTAAAGTATTCAAATGTAGATCTAATTTAACAAAACACATTGGTTTTGTACACGAAAAGAAGAGAATGCCGCGAAACAAAATATGTGATCACTGTGGTCGAGGATTCACTTCTCTAACCATCCTGCGGTCGCACATACGGACACATACAGGGGAGAGGCCGCTGCAATGTGCGCGATGTGCAGCCACCTTCGCGCATCCCGCAGCTCTGTACACACACAACAAACTTATACATAGCAAATAA
Protein Sequence: MAQLLQRLDYSSDERSKINDAVCICCLAKNVQFVNLSNCKHVHIFSMLIDSKVELNYILCYSCHHFLKKIEEFKTQVQNSIKVLNNSTIQPKYRSHKELQFSKIELNSAINSKSIDVDYIENNLNETQFKFGTFDTEIKIEHDFDYEETPEIQIKKKKRESRVTMEKKYEGVIKKIELSMEEMMAERKEEMEKKSYLNLPYKCDFCITAFDHELTFKDHMEMRHKKRPRGITCKICNSILSTKTSYDEHYKRHFRRYECVECGIKYHNVYSVLKHYNENHGRIVTQFSCDLCDFTTESNRAYRYHRDKHRSGKVECDKCGKTFVCNTGLRNHMFTIHSQSNRVYSCTICDKVYRAKSGLAAHLAKHGPSNPAYCIPCKTHFSSEMGLKHHLKTHSKHVSDSDKPFTCNECSLKFLTKRSLQEHIDWVHLNKTEHACSKCPKVFKCRSNLTKHIGFVHEKKRMPRNKICDHCGRGFTSLTILRSHIRTHTGERPLQCARCAATFAHPAALYTHNKLIHSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -