Lcam015819.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:6144491-6149384[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 1.6e+02 3.8 0.7 1 20 243 262 243 264 0.90 2 10 0.015 1.3 10.3 0.3 2 23 293 315 292 315 0.93 3 10 0.00065 0.058 14.6 0.2 1 23 338 360 338 360 0.98 4 10 0.00074 0.066 14.4 0.1 1 23 364 387 364 387 0.96 5 10 0.88 78 4.7 3.4 1 19 392 410 392 415 0.80 6 10 0.0071 0.63 11.3 1.1 2 23 422 444 421 444 0.91 7 10 1.1e-06 0.0001 23.2 1.8 1 23 451 474 451 474 0.98 8 10 0.022 2 9.7 4.3 2 23 481 502 480 502 0.97 9 10 1.3e-06 0.00011 23.1 1.5 1 23 508 530 508 530 0.98 10 10 7.2e-05 0.0065 17.6 1.4 1 23 536 558 536 559 0.95
Sequence Information
- Coding Sequence
- ATGGATACAAACACTAGATACGGAAAGTGTAGGTTTTGTTTCAGCAAAGGCAGCCACAGAGACATAATGAAGGAATACATCTGGAATGGAACGCGAGAAATTTATTACGATTTATTCCAGGAATGTTTTAATTTATACTTATGCACAAATGATAGGAGTTCCCTCATCTGTAGCAGTTGTATAGGAAAATTGAGAAATGCAAGTGACTTCCGCACAATGGTGGTGAGCGCAGAGCAACAATTAGTTGATGCGCTTGACGATAAGCAGACATTTTTTATTAATTTGAGAGAACCGACAATAGATATGGATGTTAAAGAAGAAACAGAAGAAGTAAAGAATGAGGATCATTTAGATGTTAATATAGATTTTGATAATGATGACACATTAGACAATTATAATGATACAATAGAAAGTTCTAGCTCAAATCTAGAAGACTTAGTTGATGGGGAAGCAGAACTCCTTGCAAGGTTTCCTCGGCATTTATTAAAACCTTTACCAACTAGAAAAACTTTGAAGCACAGTTGTAAACAGTTTGTTCAGGAATTGGAATTGTTGAAAGGTAAAAAAATTACAGCAAAATCAATAAAAAATCTGCTAACCGAACCCACTTCCTGCAGATTACGCAGCAAAGTATATATGACAGAAAAACTTGCTCATATCCAAAACATATCCACTGTTCTAAAGTATTCCAACCTAACCGCCTTCAAAACTAGACGCAGGTCCGGTTTTCCTTGCTTTTACTGTCGTAGGATATACGAAACCTTTGACATATTACGCGACCATCAGTACAAAGATCGGTGTAAGGCTAATTTAAAAAAAATGCTCAGCAAATCCATTATGGAGCGTCTTGTCGTTTATGTTCATGTTACAGAAATTACCTGTAACATATGTAACTCTAAAGTTACAAATTTAACTGAATTAAAGTCCCATTTAACGAATGCCCATAAAAAGAAGTTGCATCCGGAATACGGGGATAGGATAATACCGTTCAAGCTGACTAAAAGTAACGAGTACGAGTGTCAGAGTTGTGGTTTTAATTTCGAAACTTTCGGCGCCATCGAGCGCCACATGAATGTGCATTACCGAAACTTTGTGTGCGACCAGTGCGGCGCCGGGTACGTCACCCAGGGTCGGCTGAAGGTGCATCTTAAGTATTCCCACATCCAAGGCTCCTTTCCGTGTGACTTTTGCAGCAAAATTTTCAATACTCAGTACAAGCAGAAGTGCCATGTTGACTCTGTGCATAAGATGGTCAAAAAAAATAAATGTCCGAAATGTCCGGAAAGATTTACAGATTATTTCGATCGTCATCAGCACATGGTTGAAGCTCATGGAGAACTTCCTTTAAGATACAGGTGTAATGTATGTGATACAGTTTTCAAACGCCGTTATGCTTTATCCTTGCATATGAAACGCCGCCATCTTGAAATAAAGGAGAAGGAATGCCATTTATGTCCATACAAATGTCATACGATTGCTGAGCTGAAGGCGCATATGATAAAGCACAACGGGGAGAGGACGTACGAGTGCATGGTGTGCAAGAAGTCGTACGCGAGGAAAAAGACGCTGAAGGAGCACATGAGGATCCACAACAATGACCGGAGGTTTGTGTGCGTGGTATGCGGGCAAGCGTTCGTGCAGAACTGCAGCTTGAAGGGGCACATGAAGGCTCATCATGCTGATTATATGAGCAGTTTGACCAGGAGCTAG
- Protein Sequence
- MDTNTRYGKCRFCFSKGSHRDIMKEYIWNGTREIYYDLFQECFNLYLCTNDRSSLICSSCIGKLRNASDFRTMVVSAEQQLVDALDDKQTFFINLREPTIDMDVKEETEEVKNEDHLDVNIDFDNDDTLDNYNDTIESSSSNLEDLVDGEAELLARFPRHLLKPLPTRKTLKHSCKQFVQELELLKGKKITAKSIKNLLTEPTSCRLRSKVYMTEKLAHIQNISTVLKYSNLTAFKTRRRSGFPCFYCRRIYETFDILRDHQYKDRCKANLKKMLSKSIMERLVVYVHVTEITCNICNSKVTNLTELKSHLTNAHKKKLHPEYGDRIIPFKLTKSNEYECQSCGFNFETFGAIERHMNVHYRNFVCDQCGAGYVTQGRLKVHLKYSHIQGSFPCDFCSKIFNTQYKQKCHVDSVHKMVKKNKCPKCPERFTDYFDRHQHMVEAHGELPLRYRCNVCDTVFKRRYALSLHMKRRHLEIKEKECHLCPYKCHTIAELKAHMIKHNGERTYECMVCKKSYARKKTLKEHMRIHNNDRRFVCVVCGQAFVQNCSLKGHMKAHHADYMSSLTRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079334;
- 90% Identity
- -
- 80% Identity
- -