Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990239.1:11897117-11905469[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.5 4.9e+02 2.2 0.1 3 23 114 134 112 134 0.94

2 18 0.029 2.6 9.4 0.1 2 23 138 160 137 160 0.96

3 18 4 3.6e+02 2.6 0.4 3 23 392 413 390 413 0.94

4 18 0.094 8.4 7.8 0.1 1 20 421 440 421 442 0.94

5 18 0.016 1.4 10.2 0.4 2 23 452 473 451 473 0.94

6 18 1.3 1.2e+02 4.1 0.7 1 23 489 512 489 512 0.93

7 18 0.01 0.9 10.8 2.7 1 23 521 544 521 544 0.94

8 18 1.6 1.4e+02 3.9 0.4 3 22 620 639 618 641 0.80

9 18 3.5 3.1e+02 2.8 1.0 1 23 646 669 646 669 0.87

10 18 4.7e-05 0.0042 18.2 1.2 1 23 675 697 675 697 0.97

11 18 2.1e-06 0.00019 22.4 0.9 1 23 704 726 704 726 0.98

12 18 8.6e-05 0.0077 17.3 2.3 1 23 731 753 731 753 0.96

13 18 0.00046 0.041 15.0 2.6 1 23 759 781 759 781 0.99

14 18 1.8e-06 0.00016 22.6 1.4 1 23 787 809 787 809 0.98

15 18 9.9e-05 0.0088 17.1 2.2 2 23 816 837 816 837 0.97

16 18 0.0021 0.19 13.0 0.4 2 23 845 867 844 867 0.97

17 18 0.002 0.18 13.0 1.1 1 23 872 894 872 894 0.98

18 18 0.13 11 7.3 4.1 1 23 900 923 900 923 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.5	4.9e+02	2.2	0.1	3	23	114	134	112	134	0.94
2	18	0.029	2.6	9.4	0.1	2	23	138	160	137	160	0.96
3	18	4	3.6e+02	2.6	0.4	3	23	392	413	390	413	0.94
4	18	0.094	8.4	7.8	0.1	1	20	421	440	421	442	0.94
5	18	0.016	1.4	10.2	0.4	2	23	452	473	451	473	0.94
6	18	1.3	1.2e+02	4.1	0.7	1	23	489	512	489	512	0.93
7	18	0.01	0.9	10.8	2.7	1	23	521	544	521	544	0.94
8	18	1.6	1.4e+02	3.9	0.4	3	22	620	639	618	641	0.80
9	18	3.5	3.1e+02	2.8	1.0	1	23	646	669	646	669	0.87
10	18	4.7e-05	0.0042	18.2	1.2	1	23	675	697	675	697	0.97
11	18	2.1e-06	0.00019	22.4	0.9	1	23	704	726	704	726	0.98
12	18	8.6e-05	0.0077	17.3	2.3	1	23	731	753	731	753	0.96
13	18	0.00046	0.041	15.0	2.6	1	23	759	781	759	781	0.99
14	18	1.8e-06	0.00016	22.6	1.4	1	23	787	809	787	809	0.98
15	18	9.9e-05	0.0088	17.1	2.2	2	23	816	837	816	837	0.97
16	18	0.0021	0.19	13.0	0.4	2	23	845	867	844	867	0.97
17	18	0.002	0.18	13.0	1.1	1	23	872	894	872	894	0.98
18	18	0.13	11	7.3	4.1	1	23	900	923	900	923	0.97

Sequence Information

Coding Sequence: ATGGTCTCTGACGAATCTGATGATGAACCTCTATCTTTATTGGCGGCTAAAAAATCAAATCAAGACAGCTATGAAGAGCCAAATACTGAGAGCAGCGACGATGAGCCTAAGAAAAAGAAAAAGAAGGAACCGACGAAAAAGCTTGGTGTAACTATAAAAATAAATCGAAAATTAAATACTATTGTAGAACGTCCTGTAATAGAAAGACCTGCGGATGTATGGCTTTATTTAAAAGATTTAAACTCAACTGGTCCTTACAGCTGTCTATTATGTTCAGATTGGTTTATAAATCGATCTAAAATGGTCCTTCATTATGCATTAAATCATAAAAAAGATTTTTGTGGTATTTGCAGATACTTTGTACCAGATAGGGAATCATGGTGGGAACATGAAAAGTTTCATTCACCTTGGCCATGTTCCCAATGTGTGGAGACTTTTCCCTCGGATATCTTGTTACGTAACCATCTCAGTACTGTTCACAATCTAGTCCATTGTCGCCTCTGCCACTTTAGAGTTGCAGGAAAAGATGATTATAACTCACATTTGTTCCAAAAGCACAATGTCACTAATGTCTCCTGCCAAAATGAGGACCAGTTTTGGGAGCTTGATTATGACGGAGATGACAAGTTTCTTTGTTTACTCTGCTCTAAAACTGATATATTATCGTCAACACTTTTTGGGCATTTCATGGGGTTTCACCACTTTACACTTAAATGTCTAACTAATCTTATAGCAGGGAGAAATACTCCATTCACAGTTGACGGAGCAGAAGTTACTGAACGATTTGTTGAAGAACAGCTAAAAGATCGAGGGAGACTAGGTTATGTAGATTTGGGACCAAAAACATTTGATAATCAAGAATCTGGGACTGAAGAAAAGAAGGATGTGAAACCTATAGAAATTTTATTGCCTGAAATAAAACAAGAAAATACTAGTGATATGGATGATTCTAAAAAAGAACTTGAAATGACAGAAAATACTCAAAATGATGAATTACTTGATTATAAAGGTGAAGAAGATTTTGATGTTACATTAACTGAATTTATTGTGTTGGAAAAATCTTATTATGAATACATCAATCAAATGCTCATAGAGATAAATGAAAGTAGAGTACCTCAAATATGTCATATAGACTATGACAAGGTAAAGCTGGATGCACCGATAGACATTGACTGTGACTTATGTAAAAGTAGACTAGACTCAATACAAAGTTTCACAAGTCATATGATTAAAATGCACAGTGTTAAAACTGTGCCGGCATATTTTTGTCGTGTTTGCGCAACAACATTTGATACTTATGTTGAACTAGCTACTCATATAATAAATGAGTTTGCAGAATTTGAAGATCTATGGATTTGTCAGTTTTGTGACAAGGAGTTTGATAATCGTGAGGCTACAAGAAATCATTTAACTGAGCACTGGGTTACATTAGACTATGAGAATTGCTTCAGTCCACACATTGGGTTTAAATGTAAATACTGTGCTACTTTATTCTGGAATGAGTCGGACCGTGAAACACATCAGATTAGAGTCCATTTTAATAAATACAAAGACCAATTTTATAAATGTGAGAGTTGTGAAAAAACTTTTGGGGATAAGGTTTGGTACATACACCACCATTTGGAGAACCATAGTAGTGAAGATCAGAAGATGTACTTGGTTAAATGTTGCCTATGCTGTGTAGTAGTGACCAGTGTTGATGAGATGAGAAAACATTTTGAAGATAAACATCCAGAGGTCCGGAAGCTGTATTGTTCTTTGGACTCTTGCATGTATAAACCCTTGAGTCATCGGAAGTCTTTCAAGTTGCATGTTAAGATGATCCATTGTCAACAAAAACCAGAGAAACCAGTGAACTGTAATGTGTGTCAGCGCGAATTCGCGAGTGCACGCGCATGCTCCGCACATACTGCGCAAGTGCACGGACCTGGCAAGTTCAAGTGCAAGTTGTGCAAGGAAATGCTGCAGACTATTGATGAGAGGAAGTTACACTATCTTCTTCGTCATCCCGGACGCCACCCCTTCGAGTGTGTAGACTGCGGCAAATCTTTTCAATACAAATCATCCCTATACATGCATAGACAAGACCATTTACCCAATAAACAAAATTTTACTTGTAGTTACTGTGGGAAAGTATTTGCGAAAAAGGATTCATTCCGAGAACACGTACAAATACACGAGGGGCCCCGTCATGCGTGTTCATACTGTCCCATGCGATTTGTACAGCGCTCCAATATGTTAAGACACGAACGGCGACACACTGGAGAGCGTCCCTATAGATGCGCACACTGTCCACGCTCCTTTGCTGATAAGGGAGCTTGTACTGCACACACTAGAACACATTCAAAGGAATCATCCTACGCATGCCTTTATTGTGGACAGACATTTGTTCAGAAGTCCAAACTCACATATCATATTCGGAAACATACAGGTGAAAATTTGGAGTCTTGTCCTGTTTGCTCTAAGCTGTTCACAAGCGCGTGTTCTTTGCGGGAGCACATGAAAACTCACGTTGAGAAGAAACAGATAGTTAAATGTCCCTTATGTGAAAAAGGGTATCAAGACGAGCGGTATATGCTCCGTCACCTACGCACATCACACACTCGAGCTCAGTTCAGTTGTCCGCTGTGCCACAAGTTGTTGACCAGTGCAGCAGGATTAAGGCACCACGTCATCACACACAGCCCTATAAATACTTTTAGATGTAAATGTTGTCCAAAATCCTATGCAGTCAAAAGAACCATAATAAAACATCTCCGAAAACGACATGGCCTTAAAGGAACCGAATTAAATATAAAAGATTATTTCACACGTCTAGAGCCCAGGGAATGTCAATTAAATTTGGATGAAGCAACAATGAACAGTATATTTGGACCTCCCAAGAGAAGCATACCAGATATATTGATAAGCGATTTTGTTACATTTGCAAAGACTCTTCCAATTACTGAGAGTGTAGATAATAATACAGATACTGAGGAGGAGAATGATAATACAGAAACCAAAGAGAGTGATAATGACAGTGAGAGTGATGACCCACAGAGTTCCATAAAACAAGAAGCGCTAAGTGGAGATGAGTTAGAACCTACTGATTTTGTGAGTGTCAAGATTGAACCTAATGAGGAAGAAAATATGGAATAA
Protein Sequence: MVSDESDDEPLSLLAAKKSNQDSYEEPNTESSDDEPKKKKKKEPTKKLGVTIKINRKLNTIVERPVIERPADVWLYLKDLNSTGPYSCLLCSDWFINRSKMVLHYALNHKKDFCGICRYFVPDRESWWEHEKFHSPWPCSQCVETFPSDILLRNHLSTVHNLVHCRLCHFRVAGKDDYNSHLFQKHNVTNVSCQNEDQFWELDYDGDDKFLCLLCSKTDILSSTLFGHFMGFHHFTLKCLTNLIAGRNTPFTVDGAEVTERFVEEQLKDRGRLGYVDLGPKTFDNQESGTEEKKDVKPIEILLPEIKQENTSDMDDSKKELEMTENTQNDELLDYKGEEDFDVTLTEFIVLEKSYYEYINQMLIEINESRVPQICHIDYDKVKLDAPIDIDCDLCKSRLDSIQSFTSHMIKMHSVKTVPAYFCRVCATTFDTYVELATHIINEFAEFEDLWICQFCDKEFDNREATRNHLTEHWVTLDYENCFSPHIGFKCKYCATLFWNESDRETHQIRVHFNKYKDQFYKCESCEKTFGDKVWYIHHHLENHSSEDQKMYLVKCCLCCVVVTSVDEMRKHFEDKHPEVRKLYCSLDSCMYKPLSHRKSFKLHVKMIHCQQKPEKPVNCNVCQREFASARACSAHTAQVHGPGKFKCKLCKEMLQTIDERKLHYLLRHPGRHPFECVDCGKSFQYKSSLYMHRQDHLPNKQNFTCSYCGKVFAKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCAHCPRSFADKGACTAHTRTHSKESSYACLYCGQTFVQKSKLTYHIRKHTGENLESCPVCSKLFTSACSLREHMKTHVEKKQIVKCPLCEKGYQDERYMLRHLRTSHTRAQFSCPLCHKLLTSAAGLRHHVITHSPINTFRCKCCPKSYAVKRTIIKHLRKRHGLKGTELNIKDYFTRLEPRECQLNLDEATMNSIFGPPKRSIPDILISDFVTFAKTLPITESVDNNTDTEEENDNTETKESDNDSESDDPQSSIKQEALSGDELEPTDFVSVKIEPNEEENME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -