Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990253.1:6114791-6121564[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 9.5 7.6 0.8 1 23 260 282 260 282 0.97

2 10 8 7.1e+02 1.7 0.2 3 23 306 327 304 327 0.90

3 10 0.74 66 4.9 0.1 2 23 350 371 349 371 0.92

4 10 0.03 2.7 9.3 0.7 1 23 375 397 375 397 0.96

5 10 0.0024 0.22 12.8 1.7 1 23 403 426 403 426 0.85

6 10 0.017 1.5 10.1 0.9 2 23 433 455 432 455 0.91

7 10 1.3e-06 0.00011 23.1 1.3 1 23 461 484 461 484 0.98

8 10 8.9e-05 0.008 17.3 1.4 1 23 490 512 490 512 0.98

9 10 6.7e-06 0.00059 20.8 1.9 1 23 518 540 518 540 0.99

10 10 6.4e-07 5.7e-05 24.0 3.8 1 23 546 568 546 569 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	9.5	7.6	0.8	1	23	260	282	260	282	0.97
2	10	8	7.1e+02	1.7	0.2	3	23	306	327	304	327	0.90
3	10	0.74	66	4.9	0.1	2	23	350	371	349	371	0.92
4	10	0.03	2.7	9.3	0.7	1	23	375	397	375	397	0.96
5	10	0.0024	0.22	12.8	1.7	1	23	403	426	403	426	0.85
6	10	0.017	1.5	10.1	0.9	2	23	433	455	432	455	0.91
7	10	1.3e-06	0.00011	23.1	1.3	1	23	461	484	461	484	0.98
8	10	8.9e-05	0.008	17.3	1.4	1	23	490	512	490	512	0.98
9	10	6.7e-06	0.00059	20.8	1.9	1	23	518	540	518	540	0.99
10	10	6.4e-07	5.7e-05	24.0	3.8	1	23	546	568	546	569	0.96

Sequence Information

Coding Sequence: ATGGCTTTAATTAAGAGCAACGGGCCTATAATCGACCCAGCGCTGTGTAGATGCTGTAGAGCTATTAAGAAATGCAGGATTATGACTTCGGAGTACACTTGGATGGATAAAAAGGAAGTTTATTCGGATATGATAATGGATTGCTTTGGTATTCTTCTATCTCATGTAGACGAAGATGCAAAAGACAGCGGAGTCTGTGCTACTTGTGTAGTACGACTGAGAGATGCATGTGCCTTCCGACAGCAAGTGTTGCAATGTGAAGAAATGTTTTTAAATGCAAAATTAGGGGAAAAAGATGAAGTAAAGAAAGATGAACAAATGGAAATGAAGACGGAGCCCAAAGATGATTGCAGCGATCACCATTCAGAAGATGAAGATATTCATGATATCATATCTTTGGATTACTCAGCAGCTGTTGAAGAAGATCCAGATGTAAAACTACCCAAAAAAGAAGAAAAAAAAGAGAAACTAAAAGAAGAAGAAGAAGCAAAAGAAATGGCCAAAGAAATGGATATAGATCACGATGATGTAGACGATGATGATTATAACGATGATGACTTTTCGTTGTCGTCATCAGATTCTGATAAACCAATAAAGAGGAAAAAGATTAAAAAAGTTAAAGTGACTAAGAATGGGAAGAAGAAGAAGAGTAAAAAGACGAAGAAAGTAGAAAAGAAGAACACTTACGACAGAGACCTGGACTGCATGTCGGAAGAGAATCTATTAACTATCATACAATACTCATACGTCTGTCCGTTCAAGAACAGGCGGAACAACTACTACTGCTTCTACTGCAAGGATTACTACCCAAAACCCGAGGATCTGAGGGAGCATACCGTAACCCATGACACCAAACCCTTCCAGCTGCTCATGGGTTACAGAAAAATGCCCAAAATTGATATAACTCGGATAGACTGCAGGTTATGCTCCACAAAAATAACAGATCTAGAAGTTTTCAAGACCCACATAGACCAAGTCCACGGTAAGAAAATATACTTCGAAGCCCCGGACAAGATGCTCCTATACAAGTTGACATGGAACGACTTAGTGTGTCTCATGTGTAGCGACATCTTCGAGGACTTCAATACCTTAAACACCCACATGGTGGAACATTTCAGTAACTTCACCTGTGACATCTGCGGGGTCTGCTTCCTCGAGAAGCCCCGGCTGGATGCCCATCTCAAAAGACACAAGGACGATGAAAGACATACATGTGAAGTGTGCGGTAAAGTGTTCAAATCTAATCATTATAAAGACATGCACGTTGACATAGTTCATAAAAAAAAAGCAATAATCCGGTGTCCGCAGTGTGACGAGTGTTTCATGTCTTATGCGTTGAAAAACAAACATTTAACGGAAGCCCATGGGCAGAAACGTACATATCCATGTAACTTGTGTGATAAAGTGTATAATAGGCAGAAGACGCTGACGGAGCACCAGCGGAGGAACCACCAGAAGGTGCTGAAGCATCAATGTGAGTATTGTGATCAAAGATTCTATTTGCCTTCTCGGTTAAAAGAGCACATAGCAACGCATACGGGTGAGAGGAACTTTAGGTGTGAGTTCTGTGATAAGAGCTACCCGAGGCTCAAGTCCCTGCAGTACCATGTCCGCACTCATACCAATGAGAGGAGGTTCCGCTGCCACATCTGCGGGCAGACCTTCATCCAGAATGCGAGCCTCAAGTCTCACATCAAGAGCCATCATCCCGAATGTGATATTGAGGGTTGTTATTTTTAA
Protein Sequence: MALIKSNGPIIDPALCRCCRAIKKCRIMTSEYTWMDKKEVYSDMIMDCFGILLSHVDEDAKDSGVCATCVVRLRDACAFRQQVLQCEEMFLNAKLGEKDEVKKDEQMEMKTEPKDDCSDHHSEDEDIHDIISLDYSAAVEEDPDVKLPKKEEKKEKLKEEEEAKEMAKEMDIDHDDVDDDDYNDDDFSLSSSDSDKPIKRKKIKKVKVTKNGKKKKSKKTKKVEKKNTYDRDLDCMSEENLLTIIQYSYVCPFKNRRNNYYCFYCKDYYPKPEDLREHTVTHDTKPFQLLMGYRKMPKIDITRIDCRLCSTKITDLEVFKTHIDQVHGKKIYFEAPDKMLLYKLTWNDLVCLMCSDIFEDFNTLNTHMVEHFSNFTCDICGVCFLEKPRLDAHLKRHKDDERHTCEVCGKVFKSNHYKDMHVDIVHKKKAIIRCPQCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHIATHTGERNFRCEFCDKSYPRLKSLQYHVRTHTNERRFRCHICGQTFIQNASLKSHIKSHHPECDIEGCYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01193838;
90% Identity: -
80% Identity: -