Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990252.1:5850811-5856708[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.015 1.3 10.3 1.4 1 23 432 454 432 454 0.97

2 9 1.3e-05 0.0012 19.9 0.8 3 23 503 524 501 524 0.97

3 9 0.00018 0.016 16.3 0.1 3 23 532 552 531 552 0.97

4 9 2e-06 0.00018 22.5 4.0 1 23 558 580 558 580 0.98

5 9 3.5e-05 0.0031 18.6 0.2 3 23 587 607 586 607 0.99

6 9 3.9e-06 0.00035 21.5 1.5 1 23 616 638 616 638 0.99

7 9 3.8e-06 0.00034 21.6 0.8 1 23 644 667 644 667 0.94

8 9 0.044 3.9 8.8 1.4 1 23 673 696 673 696 0.90

9 9 7 6.3e+02 1.9 4.3 1 23 704 727 704 727 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.015	1.3	10.3	1.4	1	23	432	454	432	454	0.97
2	9	1.3e-05	0.0012	19.9	0.8	3	23	503	524	501	524	0.97
3	9	0.00018	0.016	16.3	0.1	3	23	532	552	531	552	0.97
4	9	2e-06	0.00018	22.5	4.0	1	23	558	580	558	580	0.98
5	9	3.5e-05	0.0031	18.6	0.2	3	23	587	607	586	607	0.99
6	9	3.9e-06	0.00035	21.5	1.5	1	23	616	638	616	638	0.99
7	9	3.8e-06	0.00034	21.6	0.8	1	23	644	667	644	667	0.94
8	9	0.044	3.9	8.8	1.4	1	23	673	696	673	696	0.90
9	9	7	6.3e+02	1.9	4.3	1	23	704	727	704	727	0.92

Sequence Information

Coding Sequence: ATGTTGCATAATACGGGTCAGTACGGTGCTAGCGACGTCCCAAACGTTGCCAATAACTTGGACAAAATGCCTCAACAACCACCAATGAATATGCATTATAATCTACCAGAATATAGCCCATACGGGCTAAACATGAACGCTGGTTTGAGTCAGTTTCATAATTTTCATCCTGTCGGATTCGCACAAAATTCACAACACAACTGGCAGCATAACTTACCCGTGAACCTAAACATGCACAGTCAGCTAAACTACAACCATCCAAAACCTGATGATTATAAAGAAATGAACAAAAATATGCTTAATATCCCACAAGTACACACAAAAGCATTTCACAAACACTTGGGCATGGACGTAAACAATTACCAAAATTATACAGATTTTAATCCAGATTTAACAAAGACACAAAAAGAAGAAGACTCAAGAAATTACAATTCACATTTTTTAGAACAAAATTTAGATTTAAGTAAACAAAAAATGGTAAATTGCACTAAACCTGTTACCGTTTACCAAAATTCACAAATATCTGATAAACATGATAGATTAAATTTACAAAATCATATTGATTTGAGTATTAAGTCTCAAAAATTACCGACAACATATCCAGAGAATGTTACAAATGTAAAACCTGCAGAAAGTTTGCCATATCAGGAAGCTCATCTAGATTTATCAAAACAAAAATCGGAGGCAAGTTCTGTGCAATGTAATTCAGATTACAATAGTAGATTTTTCAAGGACCAAGAGTCTAGACGACGGAGTTTAGAAAATACTGTTAAGATGATTGAAAATATTCTATCCCATACATCAAATACAAGGAGAACTGAATTGAGTTCTAATGAGAGCAAAATAATGAATCAAGTTGAAAATAAAAACCTTACACTAATAGATTTGTTGACTAAAAACAGTAAAATAGCATCAGATAGTATTGAAAATTCATCAACGTCTATTAATAGTAGTAAAAATAGTTTTAACGATATAAAAAATCAAAGTAACGATAAAGCAGAAAGTTTGGATAGCAATAAAAATACAAATAATAATTTAGAGAATGAAGAAAGTAGTAATGGTACGTCGTCAAATGAGGATGAGAAACCTGATATGAATACAGAGGAAACTGTTCAGATTAAAGTTGAAGTTGTACCCAATATTGTGGATATGGAACACTTGAATCCATTTCATAGAGACGCTTTTGGTGTTCTGCATGAAAATATTGGGGATAACGATATAGTTGATTCAGAAAAAAGTATTGCGTTGGCTAAAGAGCTTGTTCAGAATAAGATCCAAGTAACTGGTGCATTCTTCGAATGTCCACACTGCGCTCTTTACTTCAGCAATCCGAAACGATTTCTCATACATACAAAATGGCATACTTTTGGTCTTACAAATGAGAAACGTATGGAGATGCAGAAGGAGAAGGAAATGAAACGGCATATGAAAAAAGAAGCAAGAGTGATGGAGAAGATGAACCAGAGTGAGGTGATTGATGTAAATACTCCTGGAAAGAAATTTGGTTGCAAGGAATGTGATAAGGTGTTCAGTGTTAAGGCCAGTTTAAATAATCACAGGCAGAGATACCATCCATCAAATAGAATCCGTAATTGTAAGATCTGCGGCAAGGTCATAACCAACTGGAATGCTATGCGGGCTCATCTTGCAACCCACACTAGCGAGGATGGGTACCAATGTGATGATTGTCCGAAGAGATTCAAGCACCCACATTCTTTGGCTAAACATCGGGACACTCATTTGGAAAAAACACATGGATGCCAACAATGCCCAAAGAAGTTTGGTTCAGCGGCTTTATTAAATGTCCATATGAAAACACACGAGCGGGTGCTCCGCGGGGCGACCTTCAGGTGCACCTACTGTGGGAAGGGATTCTTTGAGTCTTATAGTTTACAGGTTCATGAAAGAACTCATCGCAACGAGAGACCGTTCTTGTGTGAGATTTGTAACACGAGCTTCGGCACCAACTCCAGCCTGAAACGACATTTGAAAGTTTCGCACAGCACATCAAAGCCCTACCAATGTCCAACATGCCACAGAAACTTCATATCAGAAGCGATCCGTGACAGACACATGCAACGGAATCACGGAAACCCTGAAGACTTCAAGTTTCTCTGTAAACAGTGTCCTTGTAAATATCTTAAGCTGAAGGATCTAAAGAAGCACACGTATAAAGCGCATCCCAAAGGAAAAAGGAGGAGAAAAGCACATTCTGATAGTGAGTGA
Protein Sequence: MLHNTGQYGASDVPNVANNLDKMPQQPPMNMHYNLPEYSPYGLNMNAGLSQFHNFHPVGFAQNSQHNWQHNLPVNLNMHSQLNYNHPKPDDYKEMNKNMLNIPQVHTKAFHKHLGMDVNNYQNYTDFNPDLTKTQKEEDSRNYNSHFLEQNLDLSKQKMVNCTKPVTVYQNSQISDKHDRLNLQNHIDLSIKSQKLPTTYPENVTNVKPAESLPYQEAHLDLSKQKSEASSVQCNSDYNSRFFKDQESRRRSLENTVKMIENILSHTSNTRRTELSSNESKIMNQVENKNLTLIDLLTKNSKIASDSIENSSTSINSSKNSFNDIKNQSNDKAESLDSNKNTNNNLENEESSNGTSSNEDEKPDMNTEETVQIKVEVVPNIVDMEHLNPFHRDAFGVLHENIGDNDIVDSEKSIALAKELVQNKIQVTGAFFECPHCALYFSNPKRFLIHTKWHTFGLTNEKRMEMQKEKEMKRHMKKEARVMEKMNQSEVIDVNTPGKKFGCKECDKVFSVKASLNNHRQRYHPSNRIRNCKICGKVITNWNAMRAHLATHTSEDGYQCDDCPKRFKHPHSLAKHRDTHLEKTHGCQQCPKKFGSAALLNVHMKTHERVLRGATFRCTYCGKGFFESYSLQVHERTHRNERPFLCEICNTSFGTNSSLKRHLKVSHSTSKPYQCPTCHRNFISEAIRDRHMQRNHGNPEDFKFLCKQCPCKYLKLKDLKKHTYKAHPKGKRRRKAHSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -