Lcam020786.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- Zfa
- Assembly
- GCA_905147385.1
- Location
- LR990250.1:7454906-7467365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0012 0.11 13.7 0.2 1 23 422 444 422 444 0.96 2 17 0.96 85 4.6 2.0 1 23 448 471 448 471 0.94 3 17 0.35 32 5.9 2.4 1 23 477 500 477 500 0.95 4 17 0.028 2.5 9.4 1.0 1 23 516 539 516 539 0.94 5 17 0.18 16 6.9 4.0 1 23 545 568 545 568 0.92 6 17 0.048 4.3 8.7 2.1 1 23 574 597 574 597 0.97 7 17 0.037 3.3 9.0 1.3 1 23 603 626 603 626 0.96 8 17 0.0042 0.37 12.0 2.8 1 23 632 655 632 655 0.97 9 17 0.015 1.4 10.2 1.8 1 23 661 684 661 684 0.96 10 17 0.006 0.53 11.5 0.9 1 23 690 713 690 713 0.96 11 17 1.7e-05 0.0015 19.5 0.8 1 23 1046 1068 1046 1068 0.98 12 17 0.0025 0.22 12.7 3.4 1 23 1072 1095 1072 1095 0.97 13 17 0.00098 0.087 14.0 0.5 1 23 1101 1124 1101 1124 0.97 14 17 0.0013 0.12 13.6 3.1 1 23 1130 1153 1130 1153 0.95 15 17 0.0026 0.23 12.7 1.3 1 23 1159 1182 1159 1182 0.95 16 17 0.051 4.5 8.6 3.3 1 23 1188 1211 1188 1211 0.94 17 17 0.00086 0.077 14.2 1.4 1 23 1217 1240 1217 1240 0.96
Sequence Information
- Coding Sequence
- ATGTTTCCTACTACTTCAGCTCATCAATACGTTAGTACAGCATCACTAACAAGTTTTGATGCTGAAACAGTAAACAGAACAAGATTTCTGTTTCAAACTTCTGAAGGCGATGCTAATCCAATCTTTACTGTAAGTATTTTTAAAAAAGAAGTCCATTATTTGATAACTGGAACAATACTCCTCATTGAAGGATTTATTTTGCAGATTACACCAGTCTTGGATACAGTCTCCGACATGAGAGTTTGCCGAGTATGCCTCGCTATGAACGTGAAGATGTCTCATATGTCGGAGTCAAACCTTAGTGTTATGTTTGAGAAAGTCACTGGTCTTGAGATTAATGAAGAGGATAAGTTACCTCAAATGTTATGTTGGGAATGTGTTGCCAGGTTAACGTCAGCAAACAATTTTGTAGAAAAAGCGCTTAAAACCCAATGGATTTTGTTAGATAAGATACATAGCTGTAAATTTCTAACAGCAAGCGACATAAACTCAATATACGAAACTCACAGCCAACTCAAATCGTCACTTGGTGTTAAAATTTTCAAAGTCAATGAATCCAATTTGTATATTAATGAAGAAAAAACACAGAAACAAAAGAAAGTAAAAGTTGAATTCATTGAACGTAGTGATCCAATAAATAGAGAAGAATATTTTCAAAACGATACAATTAATGATATTGAAGATGATGATAGTAATACAAGAGTTTTCGGTACAAATGAATATGATATGCCAATAAGTGATGGATATAACATTAAAAGTGAACAAATAGGTGTAGTTGAAGAACTAGTTGGTTTTATTACTGGTAATGAGGATGGTGCAAATACTTTTAAAGAAAATTATGATGGGTCTGAAAATATTATTAACTATGATGATTTTCTGATAAGTGATAAAAATGCTAGTCAAGTAGCAGATAATGAAAGAGAGGGGAAATCAGCAGAAGTAGAAAAAGAAAGAGAAGATGAATTAAGCAAAATAGTTACAAAGCTAGTTTCGGGAAAGAAGGTTAAGAGACAGAGATCGCTAAACAATCTTAGTGACTTTGAGGACATGGATTCGGGTCACAACACCCAGGATACGTTTAATGATCTCTCTGCATCATCAATAATGAACAACATAATATTATTCGTGGATAATAATTTAGAAGAAACTACCAACAAGGATAATATTAAAGTAGCAAAACAAAATACCGGGCATGTAAACCCTGGTACTGTCGACAGTGACATTAGTTTCACTCACAATGCCTCTGGGGTTGTCAAAAATCTATTCATTTGTAATATTTGTGATAAACCATTCGATGAAAAGACAATACTAAGACAACATATGTTGGAACATTCAAAATTACATAACTGTTCGTCTTGCGGATTCAAAACGAGTAATAAGTTCATCCTCAACGCGCATATAGAAAGCAAACACACAAAGAAAAGCGCATACATTTGTGAACATTGTAGTTACAAAACGCACATCAAGAAGTATCTTATTGCACACATCAACGCTTCACACGCAACCACCAAAATAAACAGCAAACACTTCAAGGATGGCGTTACTTTCAACTGTCCTTTCTGCACCTTCAAAACATACGTCAAAAGCAGCCTCAATATACACATCAACGCAAAACACACTAAAAAAGTCTCCTACAGCTGCTCTTATTGTAGCTTCAAAACCTTCCACAAAAACTATCTCACAGCACACGTCAACGCCAAACACACTAAAGACGTCTCCTTCAGCTGCTCCTTCTGCAACTTCAAAACCTACCAGCGACAATATCTCGCCATACACATCAAAGTCAAACACACCCAAAGCGTCTCCTACAACTGCTCTCTATGTAACTTCAAAACATACCGCAAAAACTATCTCGCCGTCCACGTCAACGTCAAGCACACCAAACACATGTCCTACAAGTGCACTATGTGCAGCTTCGAAACTTACCAAAAGAACTATCTCACTAAACACATAAACGTGAAACACACCAAAAACACAAATTACAAATGCTCCTTGTGTACCTTCACAACATACCAGAAGAACTATCTCGCGACACATATTAACGCTAAGCACACGAGAAATATTTCTTTTAACTGCAGTTCGTGTGGGTTTATAGCGTATCAGAAAAGTAGTCTTACGAGGCATGTTAAGGTTAAACACAGCAAGCAGAAGGAGCGATTTCTTCATTCTGAAGGGGATGCTAATGAGTTCTGTGTTGCACCAGGCTTGGATTCAGTCACCAACATGAGAGTGTGCAGAGTGTGTCTCGCCATAAATGTAAAGATGTATCACCTGTCGGAGCATGAGTTGAGTATTATGTTTGAGCGCATCACTGGAGTTGAGATTGACGAAGAGGATAATTTACCTAAAATGTTATGTTGGGAATGTGTTGCCAGATTATCATCGGCAAATCGTTTTAGAGAAAAATCGTTAAAAACTCAAGGGATTTTACTGGATATATTGACGCGCTCTAAATTTGTAACAATAGAAGACATTAAATCAATAGATAAAACTTATAATGAACTTAAATCAACACTTGGTCTTAAATTTTACAATTCAAATTACTCCAATTTACATATCACTGAAGATTCTGTTGATTTTGGTTATAAATGTAATTACACGAAAGAAGTAAGAATTGACAATATTAGAAATGAAGAAGAACAGACCTATGACAACATTAGAAGTGAACAAATAGATATAAGTGAATGTTCTTTGATGAGAGTAAAAAATGAAGTTGTAGATGATTATAAAGATGTTAATGAAGTAAAAATTGAAATATGTGAAAACGCACATATAAATGATGGTGATGAATTAATGATTAGTATAAAGGCAGAAAATACTAATCAAGAAGTTGAAGTTCAACTTACAACAAGCAATCAGTGGAGTGATACTCTACATGGACAAAAGGAGATAGTGAAGGTAGAGGATGTAGATTTGAGCTATAACCCACAACATTCCTGTGAACCACTCACAGATTATGGTCTAACAAATTATGACGAGACATGTCCTACACAAATCAAGAACGAAATATTTTTAGTGGATACCCACAATTACGAAGAAACAACCAATAGCGAGGACATTAAAGCCCAGAATCATTTAAGTCCAAGATTTGAAATCATAGACACTAATCCTAACGACGCTGGATCTTCAAAGGGTTTCATTTGCAATATTTGTAACAAACCATTCGATGAAAGGACAACATTAAGACAACATATGTTGCGACACACAAAGCCTTACAACTGCTCTTATTGTAATTTCAAAACTAGCAATAGATTCAGCCTCAACACACACATAAACAGTAAACACACGAAAAAAAATGCTTTCATCTGCGACTACTGCGGCTACAAAACATACATCAAAAAGTATCTTATCGCACACATTAAAACGATACACATCAAAAACGTTTCCTACAACTGTTCTTATTGTAGCTTCAAAACCAATCAAAAGAGTCATCTAACTACCCACATTAACGCGATTCACACAAAAAAGATATCTTTTAGTTGTTCTATCTGCGCTTATAAGACATATCGGAAGAATAATCTCAGGAAACACGTAAAAGCTATACATATCAAGAATATATCATTCGATTGCTCTCTCTGTAGTTACAAGACGTATAGGAAACACAATTTGACGGAACACGTGACAATAAAACACAATAAGAACATCACTTTCGATTGTTCTTATTGTAGTTACAAAGCGGGGAGGAAAAGTAATCTCACTAGACACGTTAAGGTTAAGCACTCTTAA
- Protein Sequence
- MFPTTSAHQYVSTASLTSFDAETVNRTRFLFQTSEGDANPIFTVSIFKKEVHYLITGTILLIEGFILQITPVLDTVSDMRVCRVCLAMNVKMSHMSESNLSVMFEKVTGLEINEEDKLPQMLCWECVARLTSANNFVEKALKTQWILLDKIHSCKFLTASDINSIYETHSQLKSSLGVKIFKVNESNLYINEEKTQKQKKVKVEFIERSDPINREEYFQNDTINDIEDDDSNTRVFGTNEYDMPISDGYNIKSEQIGVVEELVGFITGNEDGANTFKENYDGSENIINYDDFLISDKNASQVADNEREGKSAEVEKEREDELSKIVTKLVSGKKVKRQRSLNNLSDFEDMDSGHNTQDTFNDLSASSIMNNIILFVDNNLEETTNKDNIKVAKQNTGHVNPGTVDSDISFTHNASGVVKNLFICNICDKPFDEKTILRQHMLEHSKLHNCSSCGFKTSNKFILNAHIESKHTKKSAYICEHCSYKTHIKKYLIAHINASHATTKINSKHFKDGVTFNCPFCTFKTYVKSSLNIHINAKHTKKVSYSCSYCSFKTFHKNYLTAHVNAKHTKDVSFSCSFCNFKTYQRQYLAIHIKVKHTQSVSYNCSLCNFKTYRKNYLAVHVNVKHTKHMSYKCTMCSFETYQKNYLTKHINVKHTKNTNYKCSLCTFTTYQKNYLATHINAKHTRNISFNCSSCGFIAYQKSSLTRHVKVKHSKQKERFLHSEGDANEFCVAPGLDSVTNMRVCRVCLAINVKMYHLSEHELSIMFERITGVEIDEEDNLPKMLCWECVARLSSANRFREKSLKTQGILLDILTRSKFVTIEDIKSIDKTYNELKSTLGLKFYNSNYSNLHITEDSVDFGYKCNYTKEVRIDNIRNEEEQTYDNIRSEQIDISECSLMRVKNEVVDDYKDVNEVKIEICENAHINDGDELMISIKAENTNQEVEVQLTTSNQWSDTLHGQKEIVKVEDVDLSYNPQHSCEPLTDYGLTNYDETCPTQIKNEIFLVDTHNYEETTNSEDIKAQNHLSPRFEIIDTNPNDAGSSKGFICNICNKPFDERTTLRQHMLRHTKPYNCSYCNFKTSNRFSLNTHINSKHTKKNAFICDYCGYKTYIKKYLIAHIKTIHIKNVSYNCSYCSFKTNQKSHLTTHINAIHTKKISFSCSICAYKTYRKNNLRKHVKAIHIKNISFDCSLCSYKTYRKHNLTEHVTIKHNKNITFDCSYCSYKAGRKSNLTRHVKVKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -