Lcam015777.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:5963338-5970600[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0015 0.13 13.4 0.2 3 23 223 244 221 244 0.92 2 10 5.2e-05 0.0046 18.0 0.3 2 23 270 292 269 292 0.96 3 10 0.061 5.5 8.4 2.1 2 23 316 337 315 337 0.96 4 10 1.1e-05 0.00099 20.1 1.9 1 23 341 363 341 363 0.98 5 10 0.054 4.8 8.5 1.2 1 13 368 380 368 381 0.93 6 10 8.4e-05 0.0075 17.4 3.0 2 23 400 422 399 422 0.95 7 10 6e-06 0.00053 21.0 2.1 1 23 429 452 429 452 0.98 8 10 0.0075 0.67 11.2 0.5 1 23 458 480 458 480 0.96 9 10 7.1e-07 6.4e-05 23.9 3.1 1 23 486 508 486 508 0.99 10 10 1.7e-05 0.0015 19.5 1.6 1 23 514 537 514 537 0.97
Sequence Information
- Coding Sequence
- ATGAATCCGAATGAAAAGTGTCGATGCTGTTTAGCGCGCCCTCCCGATAAGAACTTGAAGTCAGTTTACACATGTTTTGGAAGAACTGAAATTTATGGAGACATGATAAAAGAGTGTTTTGAAATACATCTTTTATTAGAAGTAGACGAATCCGGGAATGGAATATGTGACCTTTGTATTACAAGACTCCGAGATGCTTGGGATTTTAAGCAGCAAGTCCAAAAATGTCAGAAAGAGTATCAGTGTTCTCTTAACAACTTCAAAGATGAAGACATCCCTAAAATAAAAGTGGAGTATTCTGATGCAGATGGTGAAGACAATGGAATATATTTTTTGGATGAAGACTTTGGTGGATTAAAGCAGGATGATAAAATAGTGGAAATGTTCTCTCTTGATGATGTTCCTCTTAAACGGAAAGAGAAGAAGGAGAAAAATGGAAAGAAACGACTTTTATTAAAGAAATCAAAAGATCGAAAATCGAAAAACCGCATTAGTAAGCCAATAAAACTATCTCTCTCAACATTATCACAACTCGAAAGGTTAAATTCATCGATACCAGAAATCAGACTGGTGAGCGAAAATAAAAAACATAGCGTGAACATCGAGAATATACTAAAGTATTCGAATTGTACGCCATTTTTTAATAAAACTCTCTCCGGGATAATTTGTGCATATTGCAAGGAGACTTTTCCAACAACTGAAAGTTTGCGACTTCACAGACAGGACATACATAAGAAAGATGAATTAAACTATAATAAAAGATTAGATAAAAGTAATCTGTCCATCAAAATGGATATTTTGGATCTTAAATGTAATGTTTGTGAGAAAAGATTTGATGTTGTATCTAATTTGAAGGAGCATTTGTCGACTGAACATGATGTGAAGTTTTACCCGGACGTCAATGATTATATTTTGGAGTTCAAGCTGACTGATGAGGAGTTGCTGAACTGTGCGTTGTGTCACTCACAGTTTGAGACCTTCAAAATGTTGTTACAACACATGAACAGCCATTACCGGAACTATATATGTGATGTGTGCGATATGGGGTTTATAAATAAGCATAGATTGAAGAATCATCAGCGTACTCATGATGTGGGGAGTTTTAAATGTGCGTTTTGTGATAAGGTGTTTTCTACGCGTGTGAGGCAAGTGTGTCATGAGAAATATACTCATAATAGTAACGCTAGGTACACAACGGTGTGTCCGCACTGTGATCAAAGTTTTACTAGTTATTATCAAAGGAACAGACATATGTTTAAGGACCACAATGTTTCAGCTGCCTCTTATAAGTGTAATACATGTGAAAAGACCTTTATATTAAAATCCAAACTTACCTCGCATATTAAAAAAGTGCATTTAATGGAGAGGAATCACATTTGCTCGGAGTGTGGTTTAGGTTTTTTTATAAAACAGTCGCTCGATGAGCATATGATCAAACATAATGGTCAGAGAGTGTTCAAGTGCAACGTGTGCCATAAAGCATATGCGAGGAAAAAAACTTTGAGAGAGCATATGCGGATACATAATAATGATAGGCGGTTCAAATGTGGTCTCTGCGGGTTGGCGTTTGTGCAGAAATGTAGTTTGAAAAGCCACATGTTGTCGAACCATGGGATTTCTTTGGTGGAATTTGAGAACAGGAGAAGTGATATTGTCAGTCCATAG
- Protein Sequence
- MNPNEKCRCCLARPPDKNLKSVYTCFGRTEIYGDMIKECFEIHLLLEVDESGNGICDLCITRLRDAWDFKQQVQKCQKEYQCSLNNFKDEDIPKIKVEYSDADGEDNGIYFLDEDFGGLKQDDKIVEMFSLDDVPLKRKEKKEKNGKKRLLLKKSKDRKSKNRISKPIKLSLSTLSQLERLNSSIPEIRLVSENKKHSVNIENILKYSNCTPFFNKTLSGIICAYCKETFPTTESLRLHRQDIHKKDELNYNKRLDKSNLSIKMDILDLKCNVCEKRFDVVSNLKEHLSTEHDVKFYPDVNDYILEFKLTDEELLNCALCHSQFETFKMLLQHMNSHYRNYICDVCDMGFINKHRLKNHQRTHDVGSFKCAFCDKVFSTRVRQVCHEKYTHNSNARYTTVCPHCDQSFTSYYQRNRHMFKDHNVSAASYKCNTCEKTFILKSKLTSHIKKVHLMERNHICSECGLGFFIKQSLDEHMIKHNGQRVFKCNVCHKAYARKKTLREHMRIHNNDRRFKCGLCGLAFVQKCSLKSHMLSNHGISLVEFENRRSDIVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -