Lcam014927.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:354303-359255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 2.8e-05 0.0025 18.8 0.3 1 21 162 182 162 183 0.96 2 26 0.0024 0.22 12.8 1.0 2 23 245 266 245 266 0.97 3 26 4.1 3.6e+02 2.6 4.7 3 21 271 289 270 290 0.94 4 26 0.013 1.1 10.5 0.6 2 23 334 356 333 356 0.94 5 26 0.44 39 5.7 4.0 3 23 364 383 363 383 0.92 6 26 0.017 1.5 10.1 1.5 1 23 389 411 389 411 0.98 7 26 0.001 0.09 14.0 0.5 1 23 417 440 417 440 0.97 8 26 0.0062 0.55 11.5 3.7 1 23 449 472 449 472 0.97 9 26 0.016 1.4 10.2 5.2 1 23 481 503 481 503 0.98 10 26 0.00055 0.049 14.8 0.6 2 20 628 646 627 648 0.93 11 26 0.26 23 6.4 0.2 3 23 654 674 653 674 0.94 12 26 0.3 27 6.2 0.4 2 23 680 701 680 701 0.94 13 26 9.3e-06 0.00083 20.4 1.1 2 23 707 728 706 728 0.96 14 26 0.00042 0.037 15.2 0.6 1 23 764 787 764 787 0.95 15 26 0.09 8 7.8 3.8 1 23 793 815 793 815 0.95 16 26 2 1.8e+02 3.6 0.6 1 23 849 872 849 872 0.88 17 26 1.5 1.4e+02 4.0 0.1 1 13 879 891 879 895 0.86 18 26 0.00021 0.019 16.1 0.3 3 21 996 1016 995 1017 0.92 19 26 9.1 8.1e+02 1.5 0.1 3 23 1024 1045 1023 1045 0.93 20 26 0.00038 0.034 15.3 0.8 2 23 1079 1100 1078 1100 0.96 21 26 4.9 4.4e+02 2.3 1.3 2 20 1104 1122 1104 1124 0.90 22 26 1.9e-06 0.00017 22.6 0.5 1 23 1150 1173 1150 1173 0.95 23 26 0.0027 0.24 12.6 1.2 1 23 1179 1201 1179 1201 0.92 24 26 0.11 9.9 7.5 0.1 1 23 1207 1229 1207 1229 0.97 25 26 0.28 25 6.3 0.6 1 23 1235 1258 1235 1258 0.82 26 26 0.0006 0.053 14.7 0.5 3 23 1265 1286 1263 1286 0.95
Sequence Information
- Coding Sequence
- ATGAGTCGACAAGTAGATATAAAAGCGTTGGTGTCTCATGTGATCCGCGGGGACGGCGTAAACAGATGCCGAATATGTATGGGAGAAACTACCGAGGGTCAAGTGTATCTGAGTGATACTGTGATGATGGATGGAGAGAGACCAGTCACTTTGTCCGAGATGCTGGAAACAGTTACTGGTATACAGGTGCAGAAAGAACGAGACCTGCCTACCGGAGTATGTCTGACATGCTTCAAATGTGCTATAAAGTCATTTGAATTTAGGACTTTGTGTCATCAAGCAATCTATCAATGGGAAATAACAATAGAGCTTTTAAATGGCCTTCCTTGCCAAGCCTCTTCTGGAGAATCCGTATTTGCAATTATAGATAAAAACCAAATGGTTGTTATTAATGATGATAACAAAAATTTATTCAGGATAAATCCAGCTGCTCAACAATTTACAACTCATGTAAACCATAATGTCCAAAAAGAAGATATATTATATGAATGCCCCAATTGTGGTAAAGAGTTTAAGCGTGCCCAAAAGTTGAATTACCACTTAAAAGACTCCCCAGATTTAAAACGAGCATGCTATATTTGTGGCAAAATAATGGATCATAAAGATTTAGTAATCCATTTAATTGAAGAACATAAAACAGAGCCATATGATTGTAAAAAGTGTCCAGCTTTACATTTCTCTCATAAACAGTACATGAAACATGTAGCTAAATCACACACAAATGGGGCTGCAACTTGTGTTGATTGTGGTCGGAGTTTTCAGACCCGTAATGCTTACCATGCTCACACCTTAGTCCATACTTCAAAAAACTGCCCAAGCTGCGACAAGCTATTCCGAAATCATCCTTGCTATGTGCACCACGTCCGACATTGCTGTAATTTAGACAAGAATAGAGAAGACACTATTTTATTACAAAATAAAGTGACTATCGAGGTTAAAAACAAAATTAGTAAGAGAAAAGTCAAAGTGGGTCTTCGAGGTAGCACTAATCAGGAGTGTATTTGCGATTACTGCAATAAAAAATTTGCCGCAAAGAAATTTGTTGCAGCTCACATCCAAATTGTTCACACAAAGGACACTCATCGGCCTTGCATCCACTGTGGTAAATGTTTTGCCGCCGCACACATGACAGAACATATGAAAAGACATGAGCTGGACCGCTCATATTCATGTCAGCATTGCAGTGTGGTGCTAAGAACTAAGTTAGGACTTAGCCAACATTTGCGTCTCCATACTGGCGAAAGACCATACGCATGTAAATATTGCGGAGAGACCTTTTCTGCGTCATCACGCCGTTCAGAACACATACGTAAAGTTCACAAAAGTTCAGATATAGTTTTAAAACACAAATGCCATTTGTGTCCTGCAAAGTTTCGGCTTCCCTATCGCTTGAGGAATCATCTGAAATCTGTACATAATGACGACCAAAATACTTTGAAGTTTGAATGCGATGTATGTAAAAAGAAGTTTGGTTCTTGTCAGGGACTCTTACATCACAGCCGGAAACATCAAAATATCGCTTTTCCTTTAAAAAAACCTGAAAAGTCAAGGATGATGAATGTGGTGGAAGAAAGAGAAGTGCCGAGGGGCCTGTGCTGTACTTGCACTGAAAGTGCAATAGCAGCGTGGAAGTTTAGACATCTGTGCCACGAATCCCACAGAAACTGGACACAAGTGGCATTTTTGAACATAACTAATGAACCTACAGCCAAAGACAGAATCTTCTTCATCGGTACAGCAGGAACATTATTAATAGACCATTTGAATGGTGTAGATAATGTGCCAGAAGCAAAGAAAAGACTAAACCAACTGATTGAAAAAAATAAAACGCGTAAACCACCCCAGAAATATAAGAAGAAGCCAAAAACTAGTATGAAGTGTAAATGTGACGATTGTGGGAAAGAATTTCAATTACCATATTTATTGAATCGTCATTTAATAAATACAAGAAAACGCGCTTGTACATTATGTGGGAAAGTTGTTCCTCGCGAAAAACTGATGATACATCTAAAAAAGTCACATCAAAAAACAGTTGAATATTGTGAAGTTTGCTACAAACTGTTCGATGAGCAACTGGAACTGGAACGCCACAAGACTTTACACAGGGATAGTCATTTACAATGTAAAATTTGCAAATACTCTTTTAAAAACGAAAGATCTTTACGTGCCCACATGTACGTGCACACGTTGTTTATCTGTTTCTCGTGCAATTCCAGCTTCGAGAATAAGAAATGTTATTTATACCACAAAACCCGTTGTAACAGCATGAAAAGTTCGTCGCAAAGCCTTTACGAGTGCGACGACTGTGGAAGCAAGTATACGAAGAAACCGTCGTTGAAGACTCATATTATTCAAAAACATTTGAACGTTTTGCCATACATCTGTCAGATTTGCGGAAAACGAAGTTCTACTAAAACCCATCATCGTTCCCATGAATTGATTCACAAAACTGAACGACAGATTTATCAGTGCCACTGTGGAGCCAAGCTCAGAACTGCTCTCGGCTTTCACATGCATCAGAGGATCCACTCCGGCGAGAAGCCATACAGGTGTGAGGAATGCGGCGACAGGTTTCTATCAGCTTCTAGAAGGTTAGACCACATTAAAAGGAAGCATAGAACTAAAGAATTAGGCCACAAGTGTGTCGAATGTGGTGCGAGATTTGTGCAAGAAGAGCCGCTGTTCCCCCAAGGTTTGTGCATATCTTGCACCAGTACCGCAGTGTCGGCATTCGAATTTCGAATATTTGTTACAAAATCCCGGCAGTTGTGGACTAATTGCATACACTCCTTGGAAACCCTTCCCACTTTGAATACATCGCGCAAATCTCTATACGCTATTATAAAAGAGAACTTGTTACTTCAAACTGTTAATAATTTCGAAGGAAACGCAAAGGACTTAACGCAGCATTTAGCAAACAGGCTCGTCAAAAGGAAGCCTGTTTTAACAGAAAGAAAGACACGTCATCCTCGGACTGGACCAGCCTGCAATTGCATAGACTGTGGAAAAAGCTTTGTCAGTCCTTATTACTTAAATTTGCATTTACGTAACAGTGGACAAAAAGAGGCATGCTTGGTATGTGGCGTCATCCTCACGAGGGGTCAAGAAATGAAAGAGCACCTATTCAAAATTCATAAAACTAACATGCTTCTGTGCACGGAATGTCCGTTGCTCTTTCACAGTGACGTGGAATTGAAGCAACATAATAAAAAATGTCACAGCCCTGGTGTCTTGACCTGTTCCGACTGCGGTCGAATGTTCCAAAGAAAGGCGTCGTTTGAACTTCACAACCAGATGCACATTGTGCGTACGTGTAGAGCCTGCGGGACTCAGTTTATGAACCGTGGCTGTTATAGGGAGCACCGCGCCAAATGCGAGCCTGATGCTAAGCCGGACTTGAAGTCGATATCACGATCTAAGCGATCGAACGTCCGTGACCCAGCGGCGTTCACGTGCGATTACTGCGGCAAGACCTACCGCTCTCGACCTCAGTTGAAAAACCACATACTGTGGATTCACATGGACGTGCGGCCCCATCAGTGTCAGTGGTGTGGCAAAAGATTTTACACTTCAGCCCGTCTGTCCGAACACTCGGTCGTCCACACTCGAGTCAGAAACTTCGAGTGCGACATTTGTGGTGCCAAACTAGTTTCTAAAATGGCGGCGGTGTATCACCGGCGGAGGCATACAGGTGAGAAGCCGTACGAGTGCGAGGAATGTGGGGAGAAGTTCTTATCGTCTTCTCGGAGATCAGAACACGCTAAACGGAGACACAATAGAGGTTGTATTAATTGTCCTGTGTGTATGGCAAGTTTTGTTAGGTCGCATGACTTGAAAAGGCACATGGATAGAGTGCACAATCCCGAGAAGAATCATGTTGTCAAAGTAAAAGAGAAAGAACTTTTTTCTGTTGCCGTATGA
- Protein Sequence
- MSRQVDIKALVSHVIRGDGVNRCRICMGETTEGQVYLSDTVMMDGERPVTLSEMLETVTGIQVQKERDLPTGVCLTCFKCAIKSFEFRTLCHQAIYQWEITIELLNGLPCQASSGESVFAIIDKNQMVVINDDNKNLFRINPAAQQFTTHVNHNVQKEDILYECPNCGKEFKRAQKLNYHLKDSPDLKRACYICGKIMDHKDLVIHLIEEHKTEPYDCKKCPALHFSHKQYMKHVAKSHTNGAATCVDCGRSFQTRNAYHAHTLVHTSKNCPSCDKLFRNHPCYVHHVRHCCNLDKNREDTILLQNKVTIEVKNKISKRKVKVGLRGSTNQECICDYCNKKFAAKKFVAAHIQIVHTKDTHRPCIHCGKCFAAAHMTEHMKRHELDRSYSCQHCSVVLRTKLGLSQHLRLHTGERPYACKYCGETFSASSRRSEHIRKVHKSSDIVLKHKCHLCPAKFRLPYRLRNHLKSVHNDDQNTLKFECDVCKKKFGSCQGLLHHSRKHQNIAFPLKKPEKSRMMNVVEEREVPRGLCCTCTESAIAAWKFRHLCHESHRNWTQVAFLNITNEPTAKDRIFFIGTAGTLLIDHLNGVDNVPEAKKRLNQLIEKNKTRKPPQKYKKKPKTSMKCKCDDCGKEFQLPYLLNRHLINTRKRACTLCGKVVPREKLMIHLKKSHQKTVEYCEVCYKLFDEQLELERHKTLHRDSHLQCKICKYSFKNERSLRAHMYVHTLFICFSCNSSFENKKCYLYHKTRCNSMKSSSQSLYECDDCGSKYTKKPSLKTHIIQKHLNVLPYICQICGKRSSTKTHHRSHELIHKTERQIYQCHCGAKLRTALGFHMHQRIHSGEKPYRCEECGDRFLSASRRLDHIKRKHRTKELGHKCVECGARFVQEEPLFPQGLCISCTSTAVSAFEFRIFVTKSRQLWTNCIHSLETLPTLNTSRKSLYAIIKENLLLQTVNNFEGNAKDLTQHLANRLVKRKPVLTERKTRHPRTGPACNCIDCGKSFVSPYYLNLHLRNSGQKEACLVCGVILTRGQEMKEHLFKIHKTNMLLCTECPLLFHSDVELKQHNKKCHSPGVLTCSDCGRMFQRKASFELHNQMHIVRTCRACGTQFMNRGCYREHRAKCEPDAKPDLKSISRSKRSNVRDPAAFTCDYCGKTYRSRPQLKNHILWIHMDVRPHQCQWCGKRFYTSARLSEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGEKPYECEECGEKFLSSSRRSEHAKRRHNRGCINCPVCMASFVRSHDLKRHMDRVHNPEKNHVVKVKEKELFSVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -