Lcam019225.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- PLAGL2
- Assembly
- GCA_905147385.1
- Location
- LR990231.1:3228018-3231883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.078 6.9 8.0 0.2 5 23 363 381 362 381 0.96 2 11 0.0081 0.73 11.1 0.3 3 23 389 409 387 409 0.94 3 11 0.71 63 5.0 0.4 2 23 418 439 417 439 0.92 4 11 1.2e-07 1e-05 26.3 1.4 2 23 444 465 444 465 0.98 5 11 0.0023 0.21 12.8 4.1 1 23 471 493 471 493 0.98 6 11 0.0008 0.072 14.3 0.2 1 20 497 516 497 518 0.94 7 11 0.00043 0.038 15.1 0.1 1 23 551 574 551 574 0.96 8 11 1.8e-05 0.0017 19.4 0.3 1 23 593 615 593 615 0.98 9 11 8.8e-05 0.0078 17.3 4.6 1 23 621 643 621 643 0.98 10 11 0.0027 0.24 12.6 0.3 3 23 651 671 649 671 0.98 11 11 2.2e-05 0.002 19.2 0.7 1 23 677 700 677 700 0.96
Sequence Information
- Coding Sequence
- ATGAAGTGTTTTAAGATGGAATCTTGGTCGGATTTGTGTCGGTGCTGCCTCGCTCCGGATTCTGAAGTTTGTCTTTTCAATAGTGAAAATGAAGTTCGAGAGAAGTTCTTGGAGATTACTACAGTTGAGCCAAAACAAGATGATGGCTTACCACAGAGACTCTGTAATGACTGTTATGCATTAATGACATCAGCATACCAATTTCGTATGCAATGTATGAAAGTGGACAAAGAATTAAAACTCCAATTACAAACATTCATCACCCACAACAAAGATGACAATGATGAAATGTCATATTCCCAAATAGAAACACAGTTAAAAGCTAGTGAAGATATGACGATGGAAGATATTGCAAAGGAGTCTTTCAAACAGTTGGAATCTATTATCAAAAAGGAACCAGAGGATAATGATGATGATTATTACTATGTAGTAGTTGTTGATAATCAAAGTGATGAACAAGATGACACACCAACACCAAATGATGAAGAAACACAAAAACAAGAAAATCAACAACAACAAAAAGAAGATATGATAATTGAATCTATAACAAGAGAACAATTAATGATGGACAGTGAGAGTGTAAATACATTTGAAAGGACTGTAGAGTCATTTCTTGTAACAAACCCAAAAGTATCCATTACTGTGCCTGATACTATCCTGGAGAATGAAGAACAGGATACTGATGATCATTATGACAATCCCATGGAAATGGATGTCACTCAAATGTCTCAAGAAAACAACTTGGCCATCATTGAAGACTCACAAGAGAAACCCCATGAATTTACTATACCCATCACAGAAGATATGATAAAAAATCTACCGAATTCCAAGAATTTTATCAAAATACTAACTCCATCTGGTGCTGAAAGAACCATTTTCCTCAAAAGTGAAGATGGTATTAAATATTTAACACCAGAATCTTTAAAGCTTGAAGATGATATGTCACAAGAAGTTATTTTATATGAAGGAGACGAATCTGCACAATTTCAATTGCTAAAATGTGATGATTCTGAGTTAGTTATTGAATATGCAGATGACAGTCAGATTGCGACGGTCCTGCAGCAAGAAGATGGTAGCTTTTTATGTGAATGTGGTGAACAGTTCGATGATTTAGAAATGTATGAGAAACATCAGTATAAACACAATCCTGCAGGTGACCATCTGTGCAATTTGTGCGGGAAAGGCTTTGAATCTTCAGAAATTCTGACAGGTCATATGTTGTTACACAGTAACCCTAACGGTATGGTTGTCACGTGTCCGTTCTGCAATCAGAATATCAAGAGAAATGCTTTAACACAACACATTAAGTATGTACACAACAGCAAACCTAAATGCAGTTTGTGTGACAAGACTTTTGCTAATCAAAATAATTTGAAACGTCACATGATGATACACACTGGTATAAAGGAGTTTGAGTGTGATATATGTTACAAGAGATTTCACCAGAAAATAACGATGCAAACGCACAGACTAACTCACATTAATCCTTTTGCATGCAGTCATTGTGGCATTAAGTTTGAAAATAAAAATGATCTTGTGATTCATCGAGGATCTGACGAGTGTTCGAAGTCACGTCTGGTGAAGGTGAAAGAGGAGTTGATGAAGACAATCAGACAAGAAGTAGTGACAGATAGTGGAAAGTTATTGGGATACGCGTGTGTGTTGTGCAAGAAAATGTTTTCTCTTGAATCAGCATTAGAGCAGCATATCGAGAGTTCGCATATAATTGATTTGGACTTACAAAATGATAAAAACTTAAAGAAAACAATGAAGAGATTTGAGTGCAGTATCTGTGGTAAGAGTTGTCCAAGTCAAGCTATGTTGGTGATGCACGAAAGAGTTCATACAAACGAAAGACCGTTCCCATGCCAACTTTGTTCATTGAAGTTTAAAACTAAGACCCATTTAAGAACTCATCAACTAACCCATACGCGTGAGAAAAAGTTTGGTTGTTCTGTTTGTATGAAATTCTTTGCGTTAAAAGGGAATTTGGTGGTACATTTACGGACACACACTGGTGAGAGACCTTACGTATGCACAATTTGTGGTGAAGCCTACATAGATTCAAAATATCTTAAAAAGCATAAACTAAAGAAGCATGCCATAGAAAATGTGCCATGGGACAAATATGTGTAA
- Protein Sequence
- MKCFKMESWSDLCRCCLAPDSEVCLFNSENEVREKFLEITTVEPKQDDGLPQRLCNDCYALMTSAYQFRMQCMKVDKELKLQLQTFITHNKDDNDEMSYSQIETQLKASEDMTMEDIAKESFKQLESIIKKEPEDNDDDYYYVVVVDNQSDEQDDTPTPNDEETQKQENQQQQKEDMIIESITREQLMMDSESVNTFERTVESFLVTNPKVSITVPDTILENEEQDTDDHYDNPMEMDVTQMSQENNLAIIEDSQEKPHEFTIPITEDMIKNLPNSKNFIKILTPSGAERTIFLKSEDGIKYLTPESLKLEDDMSQEVILYEGDESAQFQLLKCDDSELVIEYADDSQIATVLQQEDGSFLCECGEQFDDLEMYEKHQYKHNPAGDHLCNLCGKGFESSEILTGHMLLHSNPNGMVVTCPFCNQNIKRNALTQHIKYVHNSKPKCSLCDKTFANQNNLKRHMMIHTGIKEFECDICYKRFHQKITMQTHRLTHINPFACSHCGIKFENKNDLVIHRGSDECSKSRLVKVKEELMKTIRQEVVTDSGKLLGYACVLCKKMFSLESALEQHIESSHIIDLDLQNDKNLKKTMKRFECSICGKSCPSQAMLVMHERVHTNERPFPCQLCSLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCTICGEAYIDSKYLKKHKLKKHAIENVPWDKYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -