Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990241.1:8517701-8525259[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.9 6.1e+02 1.9 0.8 6 20 12 26 6 28 0.84

2 14 0.002 0.18 13.0 0.1 2 21 34 53 33 54 0.94

3 14 0.14 13 7.2 0.3 1 12 221 232 221 241 0.86

4 14 7.2 6.4e+02 1.8 0.4 1 19 369 387 369 387 0.96

5 14 6.2e-06 0.00056 20.9 0.3 1 23 394 416 394 416 0.98

6 14 1e-05 0.00093 20.2 0.9 1 23 431 453 431 453 0.98

7 14 4.4 3.9e+02 2.5 0.2 1 8 478 485 478 486 0.94

8 14 0.00034 0.031 15.4 1.6 3 23 507 527 505 527 0.96

9 14 0.00096 0.085 14.0 2.3 1 23 546 568 546 568 0.98

10 14 9e-07 8e-05 23.6 3.1 1 23 574 596 574 596 0.98

11 14 0.0027 0.24 12.6 6.2 1 23 602 624 602 624 0.97

12 14 8.2e-06 0.00073 20.5 0.4 1 23 630 652 630 652 0.98

13 14 9.9e-05 0.0088 17.1 0.5 1 23 656 678 656 678 0.98

14 14 0.00026 0.023 15.8 0.1 1 23 686 709 686 709 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.9	6.1e+02	1.9	0.8	6	20	12	26	6	28	0.84
2	14	0.002	0.18	13.0	0.1	2	21	34	53	33	54	0.94
3	14	0.14	13	7.2	0.3	1	12	221	232	221	241	0.86
4	14	7.2	6.4e+02	1.8	0.4	1	19	369	387	369	387	0.96
5	14	6.2e-06	0.00056	20.9	0.3	1	23	394	416	394	416	0.98
6	14	1e-05	0.00093	20.2	0.9	1	23	431	453	431	453	0.98
7	14	4.4	3.9e+02	2.5	0.2	1	8	478	485	478	486	0.94
8	14	0.00034	0.031	15.4	1.6	3	23	507	527	505	527	0.96
9	14	0.00096	0.085	14.0	2.3	1	23	546	568	546	568	0.98
10	14	9e-07	8e-05	23.6	3.1	1	23	574	596	574	596	0.98
11	14	0.0027	0.24	12.6	6.2	1	23	602	624	602	624	0.97
12	14	8.2e-06	0.00073	20.5	0.4	1	23	630	652	630	652	0.98
13	14	9.9e-05	0.0088	17.1	0.5	1	23	656	678	656	678	0.98
14	14	0.00026	0.023	15.8	0.1	1	23	686	709	686	709	0.96

Sequence Information

Coding Sequence: ATGGGAGAGCCAGTTATTTACTGTCCTTTATGTTGCAATGATACCTTTAAATCCAGACAGGATCTTTTCGATCATTTATTTCAAATATCATCTAATCTGAATTGTCCTGTATGCTCTGAAAAGTTCTCTTCATTAGAGCACCTCATAGGTCATATAAAAGACGATGACTGCGTATTCGTAAATCCTGTTGAGACTTTATTTGAGGATGATACACTAGAAACCAATAAAAAATTTTTAGATGATTCTAATATTAAATTATTTCTACGAACTAATGATGTTAAAATTAACAATAAAAATTTAGAAAATCACATATCCTCAATTAATGCAAATAATGGAGTCAAGTTGAGTAATGATAAAGAATCAGGGGTTGAAAAAATGTATGTAGAGGTGCAGTTGATGAAACAATGTCATGACACTCAGGAGATAAAGTTGGTAAAAGAAGATGGCCAAGAGCGTTATGTAATCTACACTGAAGACCCTAATTTAAATTCAGATGTCACAATAGTAACAAAACAAAATAATGATGGCACTATATCTTTAACTACTATGAAAGATACCAGTGATACTTCAGATGCAGATGGAACATTGGTTGATAAAATCCATTCATTAGAGGACCTTGAAAATGAATTGGAGACAGAGTCAAAAAATCAGGAAGAAGTCTACAGCTGCAACACATGCGGTGTCTCATTTTCATCTGTTTTGGAACATATACAGAACTATCACAATAATCAAGATGTTGTTGTTGAGGAACCATGTGAAGACAGTGATAGCAATATTCCAATAGAATATAAGTCTGCTGCGACTGAAGAGGTGTGCGATAAGCAAACCTCGAGGAGAATGATCACAGACACTGGAGATATTATAGAAGCACCTTTAGTTCAAGATAATAAAATGGTTGAAAATCATCTAATGATATCTCTCAAAGACGAACCACAAGATAAACAGGATCAAAGGTACACAATGCGGTATGTTCAATCTGAGAAGTTCTCAAACAGCATGACGAAGGAAATTAAACCTATTGATGGCAATAATGATAAGCTTCTTAACTATCATAAAGTGGTACTAAAAGAATTGCAAACAACATCTGGAGATGTTATTAAAGTATACAACTGTATGTCCTGCAATGTTTATGTATCAAGTTTATCTGAATTTAAACAGCATCCGTGTAAAGTCTTAAAGTACTCCTGTCCAGAATGTCCAATAGCGTATGAAAATTCTAAATCATTATGTGCCCATATGAAAGTACATAAAATAAAATCAACAGAAGTCTTGTACGAGGCTCCAAAAAAGTTTGAATGTGAAATCTGCGGCACAATATTCCAAACGAGCAAATCTTTGAAACTACATAAAAGGATGCATGATCCTATCAAAGCTCGTCCAATAGAACCTCCAGTGGAAACACCTGAAGGCATGGCAGCAAGTGATGATAAGTACGTCTGTTCGATATGTGATAAGTTAATACCCATAGATTATAGAGCTATTCACCAAAACTCCCACAAGAGCAGCAATAAGATGAACTGTGATATATGCAATAAGAAGTTCCATTCGCAGGAATATTTGGACATGCATATGAGTGTACATAATATGGATAAGGTTACTGTAGGAAAAAAAGACAAATTTTTCGTGTCGTTACCATATATGTGCCTATACTGCAATAGGAAGTTTGCAAGACCTCATGAAAAAGTTAAACATGAGAGAATACACACAGGTGAAAAACCTCATGAGTGCGAAATCTGTGGCAAGGCGTTTAGAGTATCATACTGTCTCACGCTGCACATGCGCACGCACACCGGAGCGAGGCCATACGCTTGTCCGCATTGCAATAAAAGGTTTAAAGCTCACAGCGTCTACAATCACCACTTACTAACACACTCAGAAGTAAGAGCATACAAGTGCCCGTTCTGCCCGAAGGCATTCAAGACCTCCGTACAGCTTGCAGGACATAAGAATTCACATACAAAACCTTTTTCTTGCCAACACTGTAACAGACCATTTGCATCGTTATACGCCGTCCGAGTGCATATGGAGATCCATTCTCGACAGAACAGTCTTAAGTTCTCCTGCAACATGTGCGGGGCCAGCTATGCGCGCGCCTTTGCCTTGAAGGATCACGTTAAGCAGGTCCACAAGCAGGACATGGATAATACAGATAACTTGGTAAGATTGTAG
Protein Sequence: MGEPVIYCPLCCNDTFKSRQDLFDHLFQISSNLNCPVCSEKFSSLEHLIGHIKDDDCVFVNPVETLFEDDTLETNKKFLDDSNIKLFLRTNDVKINNKNLENHISSINANNGVKLSNDKESGVEKMYVEVQLMKQCHDTQEIKLVKEDGQERYVIYTEDPNLNSDVTIVTKQNNDGTISLTTMKDTSDTSDADGTLVDKIHSLEDLENELETESKNQEEVYSCNTCGVSFSSVLEHIQNYHNNQDVVVEEPCEDSDSNIPIEYKSAATEEVCDKQTSRRMITDTGDIIEAPLVQDNKMVENHLMISLKDEPQDKQDQRYTMRYVQSEKFSNSMTKEIKPIDGNNDKLLNYHKVVLKELQTTSGDVIKVYNCMSCNVYVSSLSEFKQHPCKVLKYSCPECPIAYENSKSLCAHMKVHKIKSTEVLYEAPKKFECEICGTIFQTSKSLKLHKRMHDPIKARPIEPPVETPEGMAASDDKYVCSICDKLIPIDYRAIHQNSHKSSNKMNCDICNKKFHSQEYLDMHMSVHNMDKVTVGKKDKFFVSLPYMCLYCNRKFARPHEKVKHERIHTGEKPHECEICGKAFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHMEIHSRQNSLKFSCNMCGASYARAFALKDHVKQVHKQDMDNTDNLVRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -