Lcam023370.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990249.1:9947347-9950303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0017 0.16 13.2 4.1 1 23 156 179 156 179 0.98 2 17 0.0002 0.018 16.2 1.5 1 23 188 211 188 211 0.97 3 17 0.03 2.7 9.3 0.8 2 23 224 246 224 246 0.97 4 17 0.0011 0.095 13.9 1.0 1 23 255 278 255 278 0.95 5 17 5.1e-05 0.0046 18.0 1.4 1 23 290 313 290 313 0.96 6 17 2e-05 0.0018 19.3 0.4 3 23 344 365 342 365 0.96 7 17 0.00039 0.035 15.2 1.3 2 23 375 397 374 397 0.96 8 17 0.014 1.3 10.4 0.9 2 20 402 420 401 422 0.92 9 17 0.0028 0.25 12.5 3.7 2 21 427 446 426 449 0.94 10 17 0.011 0.99 10.7 1.3 2 23 458 480 457 480 0.94 11 17 0.00045 0.04 15.1 2.6 1 23 485 508 485 508 0.96 12 17 0.00019 0.017 16.2 1.6 2 23 519 541 518 541 0.96 13 17 0.00057 0.051 14.7 0.5 1 23 568 591 568 591 0.92 14 17 0.0053 0.47 11.7 0.6 2 23 625 646 624 646 0.97 15 17 0.77 69 4.9 0.5 3 23 654 676 652 676 0.91 16 17 0.028 2.5 9.4 0.1 1 23 712 734 712 734 0.96 17 17 0.18 16 6.9 2.0 1 23 740 763 740 763 0.96
Sequence Information
- Coding Sequence
- ATGTCAATAAAAGAAGAGAAGGTAAACATAAATGATATTAAAAAAGAGAAAGATGATGCTAGTAGGAAGGACCCCACTTCATTCTTACCTGATGAGCCGATGACATATGAAATTAAAACTAAGAAGAAGAAGAAAAAGAAAAAACCTGTAGATCCATTTAAAGATATAGAAGAAAAATTATCATTGCCAATTACAACAGTTTTTGAGCCAAGTGTGGATTCCGAAACTAAGCAGGCCTTTGACCCTGAAGTCACTATAAAAGTCGAAAATATAGAAGTTGAACTGGATTTTAATGATTTTGCAAACGACAGCGGCTTAATGTTAGAAGGTCCTCAAAGTGAAGATAGTCAAGAACCAGCAGTTAAAATCGAAGATCAAAATCGTGAAGCAGTTCTACTTACATTTGAAAGCATTATAAATGATAAAAATGTACTTGGTTTTGGTTCTATTGCTCCCGCACCAAATTACGTGTGCAAAGTCTGCCATCTAGTCTTTCAATCTACTAAAACTTTAAGAATGCATCAAAAAAGAAAACACAAAGTGTTCAGAAAATCGTTCAAATATATTTGCCATTATTGTTCTATGGCCTACGAACAGAAGAACAGTCTAGTTGCTCACATAAAAAGGAAACACGGACCAGATTCGGTATGTGATGATGGCGAAGAAAGAACTTGTGATGTATGTGCATTAGTTTTTAAGGGAATGACTCGATTACGTATGCATATGCGGCGGAAACACGGTTCTTTTGAAGAATCGTTCAAACACGCGTGTCAAGACTGCGGCTTAACGTACGACAAATACAGAAGTCTTATCGTACATATACAGAGGAAGCATTCTAATGAGAAAAAACCAATTTTGAACCAGTGGTTCAATTGTCCTTTCTGCCCTAAAGTTTTTACGAAACGAGAAACATATGCCAGACATGTTCAGAGGAAACACCGTGTAAGAGACGAAGATGAGCGGCTCGACGATGAAGATACTAAAATATTAATGGAAAATCCTAAAATTGAAGCGACCGGTGAAATCGCGTGTAAAGAATGCCCATTAGTTTTCTCGTCACTTAATTATTTAAAATTGCATATGAGAAGAAAGCACAATGCCCTAAGGGACGATTTCAGATTAAAATGCAGAATTTGCAACTTGTCTTACGATAAGATTGAGAGTTTGAAACGGCACATACGACGAAAACACGATAAGGGGTCGTATTGTGACGTTTGTGATAAGCAATTTGAAAGTAGGGACATGTACCTCAATCATACTCATAAGAGAACGATTCAGGAATGTCACATTTGTGGTTTAATATTCGCGTCTAGGGGCGGTTTATGCAAACATTTACGATGTACGCACCAAATTCAGTCTCCGAAAACGATAGTTTGCAATTTGTGCAACGAAACCTTCCATGATAAACGTCAATTGAAACCTCATTATTTAAAAGTACACTTAAAAGTTTCTTATACATGCTCGTTTTGTAAGAAGATATTTAAGGCTAAGGAAAGTTACAGACGACACATTCTACTGAAACATCCTACTAATAATATAAAATCAAATGAACAGAAATGTGATCAGTGTGAAGAAAAGTTTTCTGATGAATTCGAATTGTGCCGTCATATAAACATTTCACATAGAAAATTACCAGACGGTGAATTAGGACCGATGACTTTGTTAGAAGTTAAAAAGGAAGAAGTCGAAATTTCAGATACCTTCCAATGCTCAAAGTGTCCAGAAAATTACGCCAATTGGGAGCAACTAAAGCTACATTTCGAACAAAACCATCAAACGGTGTCTGAAACACAATGCCAAGTTTGTGGTGAAATGATCCCGGGGAATGAATTACAGAAGCACTTTAAGAATTTCCACACAGAGACTTCTATACGGTGTAAATATTGTGAGTTCGAAACACCTAATCGTGCGAGTATGACCCAACATATGTTGCGACATAAAAACGCGGTTACCCTCAACTGTGATTTTCCTGGTTGTAGATATAAAACATATTACGAAGGTGCGATGGAGAAGCATCGACGAAAACACATAGACCAGGGTGTTAAACTTCAGTGCTCCAAATGTCCTTTCCAGAGTATGAATAAGTACATTTTGAAATATCATGAAGAAGCCCACGAGACTGGGAAAAAGAGATATGCCTGTGATCAATGTGATTATGCCACTATTTTACCAGCCAACTTAGTCCAGCACAAATACAAGCACTCCGCGGAGAAGAGGTTTAAGTGTGAGGTCTGTCCGTTCGCTACAAAGTACAACACATCGTTACGTTTCCATGTTAAGAAGAAACATTGTGATCTCCCAACATTCAGTTAA
- Protein Sequence
- MSIKEEKVNINDIKKEKDDASRKDPTSFLPDEPMTYEIKTKKKKKKKKPVDPFKDIEEKLSLPITTVFEPSVDSETKQAFDPEVTIKVENIEVELDFNDFANDSGLMLEGPQSEDSQEPAVKIEDQNREAVLLTFESIINDKNVLGFGSIAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKYICHYCSMAYEQKNSLVAHIKRKHGPDSVCDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHACQDCGLTYDKYRSLIVHIQRKHSNEKKPILNQWFNCPFCPKVFTKRETYARHVQRKHRVRDEDERLDDEDTKILMENPKIEATGEIACKECPLVFSSLNYLKLHMRRKHNALRDDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFESRDMYLNHTHKRTIQECHICGLIFASRGGLCKHLRCTHQIQSPKTIVCNLCNETFHDKRQLKPHYLKVHLKVSYTCSFCKKIFKAKESYRRHILLKHPTNNIKSNEQKCDQCEEKFSDEFELCRHINISHRKLPDGELGPMTLLEVKKEEVEISDTFQCSKCPENYANWEQLKLHFEQNHQTVSETQCQVCGEMIPGNELQKHFKNFHTETSIRCKYCEFETPNRASMTQHMLRHKNAVTLNCDFPGCRYKTYYEGAMEKHRRKHIDQGVKLQCSKCPFQSMNKYILKYHEEAHETGKKRYACDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- -
- 80% Identity
- -