Lcam029029.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990234.1:6928151-6935638[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.48 43 5.5 3.0 2 23 258 280 257 280 0.93 2 12 0.59 52 5.3 0.1 1 23 290 312 290 312 0.92 3 12 0.00061 0.055 14.6 5.1 2 23 319 340 318 340 0.97 4 12 8.3e-06 0.00074 20.5 2.0 1 23 346 368 346 368 0.98 5 12 0.00059 0.053 14.7 4.7 1 23 377 399 377 399 0.96 6 12 7.9e-05 0.007 17.4 2.8 2 23 406 427 405 427 0.96 7 12 0.00025 0.022 15.9 8.5 1 23 433 455 433 455 0.98 8 12 1.8e-09 1.6e-07 32.0 0.8 1 23 461 483 461 483 0.99 9 12 0.00035 0.031 15.4 4.7 1 23 489 511 489 511 0.99 10 12 0.00054 0.048 14.8 0.9 1 23 517 538 517 538 0.97 11 12 0.00027 0.025 15.7 0.7 1 23 544 566 544 566 0.96 12 12 1.4e-06 0.00012 23.0 1.3 1 23 572 594 572 594 0.98
Sequence Information
- Coding Sequence
- ATGGCAAATCAAATAAATGTTGTCAATCAGTCCTCATTGGATTTAGAGCATGAGATACCTTTGACAGCAATTGTAGATGTAAATCATGCTAAAATAATCATAGGTAGTACAGATTATGCTTTGAACTCAATAATGGATGTAGCGAATAATGAAGAAATTGAAACCAAACTTGAGCAGAGTATAGACGTAAAATATGTCTGTAGAATATGCCTTTCTGCAGAAAATGAGATGATTTCTCTATTATCTAAATTCGGACATAATATGTTGGCTGATATATTTTCATCTATTACATCAATTAAAGTTAATCGAAATGGAAATTTTCCTCTACAAGTATGTATGACATGTCACAATGAAATAATTCATTGTTATGAATTTAAGGAGAAATGTTGTAACACCAATAGATTTCTGTGGTCGATATTAAAAACGCAAAATTCTGTTGAATGTAAATATGAGAATGTAAGTTTAGAAAAACTTGATAAAGAAACACAAACAATGTTTAAAGATGTATCGAGCATTAAACAGGAGGAAGATGTTGAAGATGAAATTTTAGATCAATCTGTGAAGTTTTGTCAAGAAACAGCACATTTTACAAAAACAGAAATTGATGGAGATGATCAAGAAATTGAATATCTAGATGAGGATTTTTATCTTATGGAAAAGGCTGTAACTGGAGAAAGAATAAAAAGTGTGAACATGTCAATAGAACAAACAGATTTAAAAGAAGCAATTAAAAAAAAGGGTAGAAAAGGAAATATAAAAAGAAAACTGCTTGTTTGTGATGTATGCTGTAAGAAGTTTTTTAAGATAAGAACTTTAAAGGCTCACATAAAACAATTCCATAGTAATAAAAACAAAACTAAAAAATTATTCCCATGTGGACAGTGCAAGGATTCCTTTATATCTGGAAGTGATCTTTATATTCACTCTGCTTTACATATTGATGGCAATAAATGGACTTGTAATAATTGCCATAAAGAATTTACAGAACGTAACAGATTTCGGCGTCACATCCGGCGACACATGGAGTCCATGCGCTATCCGTGCGAGCATTGCGACAAGACGTTCGCAGAGCTGTGCGCATTGCGTAGGCACGTGCGCGTTCACACTGGGGAGAAGGTCGAGAAGAAGTTTATTTGCAGTCTTTGCGAGAAACGGTTCTGCGACAGCACCCAGCTGAGTGTACACATGACGCATCACACGGGCGAGCGACCTTGTGTCTGCGAGCACTGTGATAAGACTTTTCCGTCACGCCGCCTGCTCGCCTCGCACCGCCTCGTGCACTCTGAACACAAGCAATATGCCTGCAGCTACTGTGATAAGCGTTTTCGGCACAAATCTACACGTAACACTCATCACCGTACGCACACTGGAGAAAAGCCATATGTGTGCTCTGTATGTGGCAAAACTTTCATACAAAATTCCAACCTCAAGCTGCATATGCGCACTCATACAGGTGAAAAACCTTACTCGTGTGATGTATGCGAGCGTAAGTTCTCTTCGAGATCATCACTCACCTGCCACCGTCGCACACACACGGGAGAGAAGCCCTACAGCTGTCCTGTTTGTAACAAAAAGTTCGCTCGCACCGACCTACGCTTGCACCTGCGGCAGCACACTGGAGAGCGCCCCTTCGCATGCTGCGCGTGCCCCAAAAAGTTTATCAACGCAGCGTCCCTAAGGGACCACCGACGAATACACACTGATGAAAAACCTTATGAATGTTCAATATGTTCCGAAAAATTTAAAAGAAAAAAAGGATTAACCAAACATATAAGAGGTCACGCAAAGGAAAAAAATCATAATGAAAGCATTATGATTGTGCAACAAGTACCTTTATTACTAAATAACAATATTATTTATACTAAAAATAATGTAAATGGAATTACTAACAAAACTGAATCTAACACTAGTTGTGAAAAAGAAAACATAGTGACAGAAGAAATCCCTATAGAAGTAGCTGGAGAAATTCAAATACAGGAAGAGGAGAATACTAAAAATGAAATTGTGATTATTGAAAATGAACAAAATGGTAAAAACCTGAGAAATAGTGAATCATCAAATAGTGAAAATTATATCAGCAATGACATAAATGACTTAAATTTAGTAACTGTGAATAATAGTGATGTGAACATAGCCTCTTCTTCTTTGCTGGAAGCCACTACCATGAAGCTGTACCAGTTAGACCAAAGTTTAGTACAAATTCATACATCTGGTGGACAACTTACTATTAGAAAGATAACTAGTAAAATGACTGCTAATTTTTAA
- Protein Sequence
- MANQINVVNQSSLDLEHEIPLTAIVDVNHAKIIIGSTDYALNSIMDVANNEEIETKLEQSIDVKYVCRICLSAENEMISLLSKFGHNMLADIFSSITSIKVNRNGNFPLQVCMTCHNEIIHCYEFKEKCCNTNRFLWSILKTQNSVECKYENVSLEKLDKETQTMFKDVSSIKQEEDVEDEILDQSVKFCQETAHFTKTEIDGDDQEIEYLDEDFYLMEKAVTGERIKSVNMSIEQTDLKEAIKKKGRKGNIKRKLLVCDVCCKKFFKIRTLKAHIKQFHSNKNKTKKLFPCGQCKDSFISGSDLYIHSALHIDGNKWTCNNCHKEFTERNRFRRHIRRHMESMRYPCEHCDKTFAELCALRRHVRVHTGEKVEKKFICSLCEKRFCDSTQLSVHMTHHTGERPCVCEHCDKTFPSRRLLASHRLVHSEHKQYACSYCDKRFRHKSTRNTHHRTHTGEKPYVCSVCGKTFIQNSNLKLHMRTHTGEKPYSCDVCERKFSSRSSLTCHRRTHTGEKPYSCPVCNKKFARTDLRLHLRQHTGERPFACCACPKKFINAASLRDHRRIHTDEKPYECSICSEKFKRKKGLTKHIRGHAKEKNHNESIMIVQQVPLLLNNNIIYTKNNVNGITNKTESNTSCEKENIVTEEIPIEVAGEIQIQEEENTKNEIVIIENEQNGKNLRNSESSNSENYISNDINDLNLVTVNNSDVNIASSSLLEATTMKLYQLDQSLVQIHTSGGQLTIRKITSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -