Lcam018066.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- ZFX
- Assembly
- GCA_905147385.1
- Location
- LR990243.1:507134-510950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.48 43 5.5 1.8 3 23 249 269 247 269 0.94 2 14 1.7 1.5e+02 3.8 0.1 6 23 281 299 281 299 0.94 3 14 0.042 3.8 8.9 0.4 3 23 310 331 309 331 0.93 4 14 3.8e-07 3.4e-05 24.7 0.3 2 23 356 377 356 377 0.97 5 14 0.00058 0.052 14.7 1.5 1 23 386 409 386 409 0.96 6 14 0.014 1.2 10.4 0.2 1 23 415 437 415 437 0.97 7 14 3.3e-06 0.00029 21.8 0.7 1 23 443 465 443 465 0.98 8 14 0.017 1.5 10.1 3.4 1 23 604 626 604 626 0.97 9 14 0.00049 0.043 15.0 2.4 2 23 633 655 632 655 0.92 10 14 5.4e-07 4.8e-05 24.3 1.7 1 23 661 683 661 683 0.98 11 14 7.5e-07 6.7e-05 23.8 4.2 1 23 689 711 689 711 0.99 12 14 0.00016 0.015 16.5 3.6 1 23 717 739 717 739 0.97 13 14 1.9e-05 0.0017 19.4 3.9 1 23 745 767 745 767 0.97 14 14 0.067 5.9 8.2 4.7 1 23 773 796 773 796 0.89
Sequence Information
- Coding Sequence
- ATGAACACCGCAACAACTCTTCAGCAAGCAGAATTCTCCGGCTTAAGTCTTGGTATTGGCGATGTAGAGGATCTCTCGAAGATTTGCCGTATTTGTGGCAAAATCCCAAACAAACCTGTTTACTCGCTTTTTGGTTCTGAATGCCAGAAAATGCTACTTGCAGAAAAGATGCACAAACATCTGAATATAGAGATTAACGAAGATGATCCTCCACCCAGAGGCATATGTGAATACTGTTTGAATATACTGATCAGCTGGGACGAGCTGGTGTCCAGGTGTGCACAAATTCAAGAAATACTTCACCAATGGAAATTAAATCATACAGCTGAGAATGGAACAGGTTTAGGACCATCTTATTTAGTTCAGTTAGAGCAGACCAAACCGGAGTTGGATGATGATTACAATAATTCAATCCCCAATATGGATGGCTTGCCACAAGACCCTGACTTACTTTGCCACATTGTTAAAAACATGTTGACAGAAAGTTATTTTAAAAATTTGGATATAGAGGAGAATAATTCCGATATACAATATGTTTGTCAGTTATGTACTGATAATTCTGCTTCTAGAAGTATCGAGCTTTTGTGTTCACATTTAATATTGTCTCACAAGGACCAAATTATGACCAAACACACTGTTGAGAGGTTCATAAAAGAAAACATCATGTTTGAAGAAGTCCTCATTGATGAAATAGTTGATACACAATCAGAGAAAGACTCCTTGATCGATATACCGAATTTGTTTTGTCCTTTCTGCGACAGCGTTTTCTCATCTGCGACCCGCCTCCTGTGCCATCTAAACAAACATATTGAAGTGAGCATTGACAATGGAATTGAATGCTGTGACCTGTATTATCGTGATAAAAAATCTTTTGTGGCGCACTTGCAGGAAGCGCACGTCGATAGAAATGTAGTGGGAAAGGAAATATGTAAAAGTTGTGATTTCACCGCCAACGACAGAGATGAGCTCAAAAAACATGTTCTTGAAAACCACTTTGTAAATAAACATGAATTTGAGCAAAAGAAGAAACACCCGAGCCCTAAGAATCAAAAGTTTATACCGGCCGTGTGTCCCGAATGCGATAAAGTATTTTCAAACAAGTACAATATGCTTGTTCATATGAAAAATCATAATAAATTAAAAGATTCCTCAAAGTTTGCCTGTGACAAGTGCAGCAGAAGTTACAAGAGCATCGGAAGTTTGTCTCATCATCAGAAAGTAGTGCATGAAGGATTACTGCGGTTTCCTTGCCCTCATTGCGCGGAAGCGTTTCCATCCAAAATGGAGAGGGACGTGCATACTCGCATTCACACGGGTTATAAACCCTTCGTTTGTACATACTGCGGCAAGAGCTTTCGAGCCAAAAACAGCCTTGACCGACACATAGACATGCATTTAGATATACGGATATGGACTCCAGATTCGAACGGGCGCGACCGTTACGAAGCGAGCGATTATGTAAACGACCTAAAATGTTGTCCAAAGCTTCCTCTGAAAGCGAATAGCGATTCCATCGCTTCAGACGACGAACCTCTCGCTAATGTTGCTACAAGACAAACATTGTATTCATACCATATTTTTTATACCGCTCTAAAGAACTTCAGAGATCATCTTGTAAATAACCACGACGGTCAAAGTAACTGTTCAGATTTCTCGGACTCCACGGAATCCGGCGAAGAAAATATAGAAGAAATAGATTTCAACGGCTTCGACGACTTAACGGAAAGTAACATGAGGAAGGACAAAATGGATGAAGAAACTAGAATCGAACTCGGCGAAGTTCAAACTAAAATCAACGGAAAAGTATTTTACACGTGTAAAATTTGCGGAAAGAATTTAAGTTCCTCCCACACTTATATATTTCACAAACGAATTCACACGGGAGAGCGCCCTTGCGTCTGCCACATGTGCGGCAAGCAGTTCCGAGCACCGAACGGACTGCAGCGACATCTGACAGAGACGCATCTCAAGCAACGGCTTTACATCTGTGTAATATGTCACAAAAATTTTGCTAATTCTCAAAATTTAAAACAACACATGCGCATACACACCGGCGAACGACCTTACGTTTGCTCCCATTGCGGTAAAAGATTTACACAAAGCGGATCGTTGCATGTCCATCTGAAAACTCACACCGAACAGTTCCCTCACCCCTGCACAGACTGCGGCTCCAAGTTCAGACTGCGCTCAAGCTTAAAAAGACACAGACTAAAACACACAGGAGAGAGGCCGCACGTTTGTGTCCACTGCGGAAAAGGTTTTAGACAAAAACATGAACTGAACGGTCACATATTGACTCACACGGACTCCAAGCCCCACGCCTGCGCCACTTGCGGCGTCGCCTTCAGGCAGCGGAGAGCGCTCCGGCACCACTGCAAGCGCTTGCACGACAACGACTGCGCGGACGCGACGCTAATGCCGTATAGTAATGTGGCACATTATGAGTGA
- Protein Sequence
- MNTATTLQQAEFSGLSLGIGDVEDLSKICRICGKIPNKPVYSLFGSECQKMLLAEKMHKHLNIEINEDDPPPRGICEYCLNILISWDELVSRCAQIQEILHQWKLNHTAENGTGLGPSYLVQLEQTKPELDDDYNNSIPNMDGLPQDPDLLCHIVKNMLTESYFKNLDIEENNSDIQYVCQLCTDNSASRSIELLCSHLILSHKDQIMTKHTVERFIKENIMFEEVLIDEIVDTQSEKDSLIDIPNLFCPFCDSVFSSATRLLCHLNKHIEVSIDNGIECCDLYYRDKKSFVAHLQEAHVDRNVVGKEICKSCDFTANDRDELKKHVLENHFVNKHEFEQKKKHPSPKNQKFIPAVCPECDKVFSNKYNMLVHMKNHNKLKDSSKFACDKCSRSYKSIGSLSHHQKVVHEGLLRFPCPHCAEAFPSKMERDVHTRIHTGYKPFVCTYCGKSFRAKNSLDRHIDMHLDIRIWTPDSNGRDRYEASDYVNDLKCCPKLPLKANSDSIASDDEPLANVATRQTLYSYHIFYTALKNFRDHLVNNHDGQSNCSDFSDSTESGEENIEEIDFNGFDDLTESNMRKDKMDEETRIELGEVQTKINGKVFYTCKICGKNLSSSHTYIFHKRIHTGERPCVCHMCGKQFRAPNGLQRHLTETHLKQRLYICVICHKNFANSQNLKQHMRIHTGERPYVCSHCGKRFTQSGSLHVHLKTHTEQFPHPCTDCGSKFRLRSSLKRHRLKHTGERPHVCVHCGKGFRQKHELNGHILTHTDSKPHACATCGVAFRQRRALRHHCKRLHDNDCADATLMPYSNVAHYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -