Lcam015781.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:5985434-5989051[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.04 3.6 8.9 0.3 2 23 110 131 109 131 0.96 2 24 0.00089 0.08 14.1 0.0 1 23 135 157 135 157 0.98 3 24 0.028 2.5 9.4 0.3 1 23 162 185 162 185 0.96 4 24 4 3.5e+02 2.7 1.1 2 23 193 215 193 215 0.93 5 24 0.00087 0.078 14.2 2.4 1 23 222 245 222 245 0.97 6 24 0.51 45 5.5 2.3 1 23 335 357 335 358 0.92 7 24 0.019 1.7 10.0 0.1 2 23 385 407 384 407 0.97 8 24 0.36 32 5.9 3.2 2 23 430 451 429 451 0.97 9 24 0.73 66 5.0 3.0 1 21 455 475 455 477 0.94 10 24 8.1e-05 0.0072 17.4 1.2 1 23 482 505 482 505 0.98 11 24 0.082 7.3 8.0 0.4 2 23 513 535 513 535 0.97 12 24 0.00022 0.02 16.0 7.0 2 23 543 564 543 565 0.95 13 24 0.0034 0.31 12.3 0.5 1 23 571 593 571 593 0.97 14 24 5.1e-05 0.0045 18.0 2.9 1 23 599 621 599 621 0.99 15 24 0.0045 0.4 11.9 1.3 1 18 627 644 627 644 0.95 16 24 0.0012 0.11 13.7 1.3 1 23 701 724 701 724 0.92 17 24 0.015 1.3 10.3 0.2 2 23 750 772 749 772 0.94 18 24 0.51 45 5.5 0.0 1 23 820 842 820 842 0.90 19 24 0.61 55 5.2 2.8 1 19 847 865 847 867 0.86 20 24 0.0071 0.63 11.3 1.2 2 23 878 900 877 900 0.94 21 24 0.00016 0.014 16.5 0.7 2 23 908 930 907 930 0.96 22 24 0.0037 0.33 12.2 2.3 1 23 936 958 936 958 0.95 23 24 5.7e-05 0.0051 17.9 1.9 1 23 964 986 964 986 0.98 24 24 0.0078 0.69 11.2 5.4 1 23 992 1015 992 1015 0.97
Sequence Information
- Coding Sequence
- ATGATGCATTCAAATGCAACACCAATTCGCTACAAAGGCGATATTGGCTATGGATGCTGTTTCTGTTTAGATCAATATCCAGATCCAGCTGAACTAAAGACCCATACTATAGAAACACATGATAGTGAGAGTAAAAATAAAGTTGTGCAGGAAATGCGTGTATATACAGTAAAACTAGATATAACGGCATTGCAGTGTAATATTTGCCGAAACGAGATACAGACGATAGAAGCGCTATTTGATCATCTAATCAATAATCATAAACGGATGATATATACAGATATAAAAAATCATATAGTGCCATTTAAGTTTGATGATGATAAATTAAGATGTGCTATATGTTCGGAGGAATTTCTTAAATTCATAAATTTGACAGAACATATGAACACTCATTTCAGAAACTATATCTGTGACGTGTGCGGTGCGGGATTTGTTAATCGCGATATTTTGAGAAGTCACTTAAGAATTCATAAAACAGGATCGTTCACTTGTGATTTCTGCGCTAAGATCTTTAATACGCGAGTTAAAGTGCTGTCACATGTAAATATTGTGCATAAGAAACTGAATATGACTCGAAAGTGTGGGTACTGTAATGAACTTTTTGGTGATTATCGTAAAAAAAATGAACATTTGACAAAACAACATGGCGTGTCTCCACAGACCTTCAAATGTGATAAATGCAACGAGATGTTTGATAACCGAAATCGTTTAAGAGAACATAAAAAAAGGATTCATTTGATAACGATGAGACCGAAGTGTAGGACTTGTGGTAATCCATCTGAAACTAAAAATTTCGAAGAAATTGAAAGTGATATTATATCTACAAAACGAAAGATTAAACCAGATTCAGGGAATAAAGTTAACAGAAAAGCTAGAATCACAATTAAAACTAAAAAAATTAAGTTAAAACCGATCAAAGAATTGTCGAAACATCACCATAACATAAAGGAGATACTTCAATGTTCAAACACAACACCTATTCACGGAAAAAGTGACATCGGCTACTTGTGTTGCTATTGCCCTGAACAGTTCTTATATCCGGCTGATCTAAAATCACATACAATCCAACATCACAAAAACGCTTCAAAACCTAAATTCTTTCAAAAGAGAGACTTACAAAAATTTTACGTAAAAGTCGACATCACAGGTTTAAAATGTAACATATGCAATAACGATATCGAAAATTTGGACTCTTTAATCGATCACTTAAGAACAGAACATGGCAGGAGGATCTATACAGATGTTAAAAACCACATGGTGCCCTTCAAATTTGACAGCGAGGAATTAAAATGTTTCGTCTGCTCAAATGTTTACACTAAATTCAAAATGTTGTTAGAGCACATGCATAAACATTGTAGAAACTTCATTTGTGATCTTTGCGGGTCTGGATTCTTCAATCGGAGGTCATATTTGAATCATCTCAAATGTCACACAGTCGGGGAGTTCAAATGCGATAGATGTGACAAAGTTTTTGACAATGCTCAAAAGAAGAATCAACACATCCGCACTGTCCACGTTCATGGATATATGTTAAATAGATGTGGGTACTGCAATGAAAAGTTTGCTGGATATCGAACTAAAGCAGAACATCTCCGGACAGTTCATGGTGTTAGATCTGAAGCGGCCAAATGTCAAGCTTGTGAGAAGAGTTTTTGTAATAAAGACTCTTTACGAAAACATATCAAACGTCACCATTTGATGGAAAATCAATACGCCTGTACTCTCTGCGAAATGAAATTCTTTGCGAGAAAAAATTTAATGGAACATATGGTCACACATACTAAATCTCGTAGTTTTCAGTGTGGGGTGTGTTTTAAGAGATATGGAAGGCAACATACTCTGCGAGAGCATATGCGTATACATAATAATGATAGGCGGTTTAAGTGCGAGCACTGTGGAATGGCGTTTGTCCAAAAATGCAGTTTACGAAGATTTCACAAAGAAATTGATATTGAAGATACAGTAGAAACAAAAGAAGGTATTAAAAAGGAAAGCAACTTAATAAAAAAGGGTGGAGAGTTGCAAAAACATCGTTCTAATATGAGAGAAATTTTGATTAATTCTAATGCGACACCGATCCGTTGCCGCGGCGGTATTGGTTACAAATGCTGTTTTTGTACTCAGCAATTTCCTGATCCTGCTGACTTGAAAAGGCATACTATAGACATACACGATAAAGATAAATATAATTTTATGAAGGGCAAAGACTTGTATAAGTTCCACGTTAAATTGGATATAACGGCGCTTCAGTGCAATATATGCAACACTGCTATTGACACTCTGGAACACTTAATCGATCATCTAAAAGATGTGCATAAAAAGAATATGTTTACGGATATCAAGAATCAAGTGTTGCCATTTAAATTCGATAGCGAAAAATTGAGATGCTTTTTATGTATGAACGTTTATCACAAATTTAAATCCTTACTAGAACATATGAATGTGCATTACAGGAATTATGTCTGCGATGTGTGTAATGCTGGATTTGTCAGTCGTGTAATTTTAGCTCAGCATTCAGAAATCCATAAACTCGGTACATTTCATTGTGATTATTGTCCGAAAATCTTTGATACGTTTAGGAAAAAACGTTCCCATGAGAAATGTGTGCACACGCACTCGAATACGTTGAACAAATGCGGTTACTGTGATGAAAAGTTTAAAGACTACAGACAGAAAGAAAAACATTTAGTCAAAGTGCATGGGGTTAACTCTCAAGAACTGAAATGTCAGGCGTGTGACAAAGCGTTTACAAATCAAAAAGAATACACTGTCCATGTGAAAAGACTACATTTGATGGATAAGAGGCATGCGTGCACGGAATGTGACATGAGATTTTTTACGACTACGGAGTTGAAAAGTCACCTCGTAAAGCATACCGGGCTGAGGAAATTCGAGTGTGAGCTGTGCCATAAGGCATACGGCCGTAGAAAGACCTTACGTGAACACTTGCGAATACACGCAGACGATAGACGGTTTAAATGTAAACATTGTGCACAGACATTTGTGCAGAAGTGCAGTTGGCGAGGACATATGCGAGCAAAGCATGGAGAAGCAGTATAG
- Protein Sequence
- MMHSNATPIRYKGDIGYGCCFCLDQYPDPAELKTHTIETHDSESKNKVVQEMRVYTVKLDITALQCNICRNEIQTIEALFDHLINNHKRMIYTDIKNHIVPFKFDDDKLRCAICSEEFLKFINLTEHMNTHFRNYICDVCGAGFVNRDILRSHLRIHKTGSFTCDFCAKIFNTRVKVLSHVNIVHKKLNMTRKCGYCNELFGDYRKKNEHLTKQHGVSPQTFKCDKCNEMFDNRNRLREHKKRIHLITMRPKCRTCGNPSETKNFEEIESDIISTKRKIKPDSGNKVNRKARITIKTKKIKLKPIKELSKHHHNIKEILQCSNTTPIHGKSDIGYLCCYCPEQFLYPADLKSHTIQHHKNASKPKFFQKRDLQKFYVKVDITGLKCNICNNDIENLDSLIDHLRTEHGRRIYTDVKNHMVPFKFDSEELKCFVCSNVYTKFKMLLEHMHKHCRNFICDLCGSGFFNRRSYLNHLKCHTVGEFKCDRCDKVFDNAQKKNQHIRTVHVHGYMLNRCGYCNEKFAGYRTKAEHLRTVHGVRSEAAKCQACEKSFCNKDSLRKHIKRHHLMENQYACTLCEMKFFARKNLMEHMVTHTKSRSFQCGVCFKRYGRQHTLREHMRIHNNDRRFKCEHCGMAFVQKCSLRRFHKEIDIEDTVETKEGIKKESNLIKKGGELQKHRSNMREILINSNATPIRCRGGIGYKCCFCTQQFPDPADLKRHTIDIHDKDKYNFMKGKDLYKFHVKLDITALQCNICNTAIDTLEHLIDHLKDVHKKNMFTDIKNQVLPFKFDSEKLRCFLCMNVYHKFKSLLEHMNVHYRNYVCDVCNAGFVSRVILAQHSEIHKLGTFHCDYCPKIFDTFRKKRSHEKCVHTHSNTLNKCGYCDEKFKDYRQKEKHLVKVHGVNSQELKCQACDKAFTNQKEYTVHVKRLHLMDKRHACTECDMRFFTTTELKSHLVKHTGLRKFECELCHKAYGRRKTLREHLRIHADDRRFKCKHCAQTFVQKCSWRGHMRAKHGEAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -