Lcam014970.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- ZNF296
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:790602-803050[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.032 2.9 9.2 0.0 3 23 123 143 121 143 0.97 2 15 0.00012 0.011 16.8 2.4 1 23 242 264 242 264 0.99 3 15 0.00013 0.011 16.8 0.9 1 23 270 293 270 293 0.96 4 15 0.23 21 6.5 6.4 1 23 298 321 298 321 0.94 5 15 2.9e-05 0.0026 18.8 0.9 2 23 486 507 485 507 0.97 6 15 0.0012 0.11 13.7 2.0 1 23 513 535 513 535 0.98 7 15 1.5 1.3e+02 4.0 6.7 1 23 598 620 598 620 0.96 8 15 5.2 4.7e+02 2.3 0.1 1 23 627 649 627 649 0.93 9 15 0.00019 0.017 16.3 1.5 1 23 655 677 655 677 0.95 10 15 0.00011 0.0099 17.0 2.6 1 23 683 705 683 705 0.97 11 15 0.00025 0.022 15.9 3.5 1 23 714 736 714 736 0.99 12 15 0.00012 0.011 16.8 0.6 2 23 783 804 783 804 0.97 13 15 0.055 4.9 8.5 5.8 1 23 821 843 821 843 0.95 14 15 2.4e-06 0.00022 22.2 0.7 1 23 849 871 849 871 0.98 15 15 5.2e-07 4.6e-05 24.3 3.1 1 23 877 900 877 900 0.98
Sequence Information
- Coding Sequence
- ATGAACAACCATGTACCTGCCACTCGTGATGTTGATCCACTAGGTTATGGTCTAACCAATTTCCACAATTTTGAGAGCTACGACAATTTACCTTTTCCCCAACATGGACCAACATATAACGTTAAACAGGAACTTTATCAAAATCCGTATTTAGCACAAGTAACTAGGAATGATCAAAATAATGAAACGACTCAAAGTCAAAATAATGATAAACCACCACCAGCACCTCAACCAGCGGTAAGTAATGCTAATACTAATGAAGATGTCAAACCAGATGTTTTTAATATAAGGAAAACAAAGATTAAACGGGAAAGAAGTAAATACTTCTCGGAAAAGATAATGGATAAAGATTTTAAATTCTACGGCTGTACATTGTGTAACATAGCGTTTCCGACGTTACAAGAATTGGATACTCATGTGTTAATTCATAAGGAGAGGGTGACGAGTTATGATTTGAGGATCAAAAGTAGAATAAGGAAGAAGAAGATGTTAAAAGAGTTGCTGAAGAAAGAAAAGATGAAAGATTCTATTAAAACGGAAGATGTAGATATTGAAATTAAACCTGAAGACGGTTATATAGGTAACGAGAAAGCATCTGATGTAATTAATACGGAATCAGATAATCAGAGTTCGAAGGAAAATAAAAATAGTAGTAAAAAAGTTAAGTCGGAGAAGAAGGGGAAAGGAAAGAAATTGAATAACAAAGATGATGAGCTGAAGATTTACAAATGTTTTGGATGCGAGAAACAGTTTACGTTGAGTTATTATTTGAAGCTTCATGTCAGATCTCATACAGACGAGAAGCCCTACACATGCGCTCAGTGTGGCCAGTCCTTCATAACAGCGAGTAAACTAGGAAGGCATAATAAAAGATTCCATTTGGCTATTAGATATCAGTGTAGGATTTGTTATAGATACTTCTCTAGGTTCGAATTTTTAACCCATCATTTTGACAAGAAACATCCAGACGATAAATTAGAAGGAGAACCTTATGATTTCAACGCAATATTACCATATTTAAAGGAACTCGAGGAACAAATGCAGGAAAAAAACGAGATAAAAGAAAAGGAAAAAGAGGATAATCTCAAAATAGAAGATGTATGGAATGATTCCGGAACAGAAGAGCATTGTGGGAAAAATATCAAAATCGATGTTCAGATTGAGGAGGTTAAGGTGGACATGGGTGAAATAGAAATAAAAATAGAAGCGAAAGATGAAGAAATCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGGACGAAAATTTATCCGACGAAGATTACTTCCCCCTAAACACCTGGGCGTCTACACCTAAAATAGAATCCCCCCCAACCTCACCAAAACCAAAGGATAAGCTACAATGTTCAGTATGCCAGAAGAAGATAAGCACGGTTTCGTATCTGAAGGTACACATGCGGACACACACGGGCGAGAGGCCCTTCAAGTGCTACGTGTGTAACGCCGGGTTTATAACTAGTAGCAAGATGCACAGGCATGTGTTGACCCACCCGGAGTCTGTTGCAGATGGCAAAATCAAATCGGAAAAGGATGAAATAAAATCGGAAAATGAAAAGGACGAGAATGATGAAGATAATAAGGACAATAAGCCATTAAAAAAAATAAAGAAATCAATGGAGAAGTTCAGCAAGAAGTCCCGCGGGATAAAGAAGGAGAAGCTATATAAGAAGCGCCCTCACGCGTGCGACTTCTGTCACAAAAGATTCTTACATATAGAAACATTACAGGTACATAAAAAAAGTCATGAAGGCGAGACAAAGTCGTATGAATGCAAGTTCTGCTTGACGCCGCAAGAGGACGCCGCGACACTGGAGACTCACGAGGCGACGCACACGGGCGCGAAGCCCTACCTCTGCACCATCTGTGGCAAGTCTTACAAGAATAGGGAATCTATGGTGTACCACAGGAAGAACCACAAGCCCGAGAAGGAGTTCCAGTGCGACATATGCACCAAGTCGTTCAACGCGCAGTGCAAGCTGCAGCGCCACATCGTGAGCCACCGCGTGGACCGGTTCATCCTGCGGTACGAGTGCCCCGTCTGCGCTCACATGTTCAACACCAAGTATCACATGCAGATGCATCTGAACACGCACCAGAAGGAGGGGCTAATACAAGAAGAAAACCGCAATGAAATACTAGCAATGGTGTTACAGAATGCCAGGAAAATACCCAAAAAACCAGACACTTCGGCCTCACTCACCGACATAGTGCCCAACGATGAGCGGAGCAGAGTCTGCAACATATGCGGGGAAGTCTTCCAACACTTCTACTATTTGGAGGAGCACTTGAAGAGCCACGGCTCCAAGATAGCTATTGAGGATAGCGAGAAGGAGGAGGAGAAGAAGCATATATGTAAAGTTTGCAACAAAGGATTTAAATTGCATTATTATCTGAAACTTCATAGTTTCACGCACACGAAGGAGAAGCCGTTCATCTGCCAGCAGTGTGGCAAGGGGTTCATCACCCGGGGGAAGCTCAAGCGTCATTTGGAGACCCACACGGGGCTGAAGAAGTACCAGTGCCACATCTGCTACAAGTTCTTCACGAGGCCGAGCTACTTGAGGATCCATGTGCGGACTATCCACGGCACTCAGGACTACAACTTCAGGCTGGATAAGGTGGAGTATTCCAGCTCGGTGCATGATGGGCAGTTGTGA
- Protein Sequence
- MNNHVPATRDVDPLGYGLTNFHNFESYDNLPFPQHGPTYNVKQELYQNPYLAQVTRNDQNNETTQSQNNDKPPPAPQPAVSNANTNEDVKPDVFNIRKTKIKRERSKYFSEKIMDKDFKFYGCTLCNIAFPTLQELDTHVLIHKERVTSYDLRIKSRIRKKKMLKELLKKEKMKDSIKTEDVDIEIKPEDGYIGNEKASDVINTESDNQSSKENKNSSKKVKSEKKGKGKKLNNKDDELKIYKCFGCEKQFTLSYYLKLHVRSHTDEKPYTCAQCGQSFITASKLGRHNKRFHLAIRYQCRICYRYFSRFEFLTHHFDKKHPDDKLEGEPYDFNAILPYLKELEEQMQEKNEIKEKEKEDNLKIEDVWNDSGTEEHCGKNIKIDVQIEEVKVDMGEIEIKIEAKDEEIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDENLSDEDYFPLNTWASTPKIESPPTSPKPKDKLQCSVCQKKISTVSYLKVHMRTHTGERPFKCYVCNAGFITSSKMHRHVLTHPESVADGKIKSEKDEIKSENEKDENDEDNKDNKPLKKIKKSMEKFSKKSRGIKKEKLYKKRPHACDFCHKRFLHIETLQVHKKSHEGETKSYECKFCLTPQEDAATLETHEATHTGAKPYLCTICGKSYKNRESMVYHRKNHKPEKEFQCDICTKSFNAQCKLQRHIVSHRVDRFILRYECPVCAHMFNTKYHMQMHLNTHQKEGLIQEENRNEILAMVLQNARKIPKKPDTSASLTDIVPNDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDSEKEEEKKHICKVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLDKVEYSSSVHDGQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -