Basic Information

Insect: Limenitis camilla
Gene Symbol: Sall1
Assembly: GCA_905147385.1
Location: LR990238.1:356202-357734[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5e-05 0.0045 18.1 0.8 2 23 187 208 186 208 0.98

2 11 8.3e-05 0.0074 17.4 0.6 1 23 214 237 214 237 0.97

3 11 0.00011 0.0095 17.0 0.7 1 23 244 266 244 266 0.98

4 11 0.0017 0.15 13.2 1.9 3 23 274 294 272 294 0.97

5 11 7.3e-07 6.5e-05 23.8 1.2 1 23 300 322 300 322 0.98

6 11 2.7e-06 0.00024 22.0 2.0 1 23 328 350 328 350 0.98

7 11 2.6e-05 0.0023 19.0 0.1 2 23 357 379 357 379 0.96

8 11 0.0027 0.24 12.6 0.5 2 23 385 403 384 403 0.84

9 11 0.00016 0.015 16.5 0.5 1 23 409 432 409 432 0.97

10 11 0.046 4.1 8.7 0.6 1 23 438 462 438 463 0.85

11 11 3.7e-05 0.0033 18.5 1.9 1 23 469 492 469 492 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5e-05	0.0045	18.1	0.8	2	23	187	208	186	208	0.98
2	11	8.3e-05	0.0074	17.4	0.6	1	23	214	237	214	237	0.97
3	11	0.00011	0.0095	17.0	0.7	1	23	244	266	244	266	0.98
4	11	0.0017	0.15	13.2	1.9	3	23	274	294	272	294	0.97
5	11	7.3e-07	6.5e-05	23.8	1.2	1	23	300	322	300	322	0.98
6	11	2.7e-06	0.00024	22.0	2.0	1	23	328	350	328	350	0.98
7	11	2.6e-05	0.0023	19.0	0.1	2	23	357	379	357	379	0.96
8	11	0.0027	0.24	12.6	0.5	2	23	385	403	384	403	0.84
9	11	0.00016	0.015	16.5	0.5	1	23	409	432	409	432	0.97
10	11	0.046	4.1	8.7	0.6	1	23	438	462	438	463	0.85
11	11	3.7e-05	0.0033	18.5	1.9	1	23	469	492	469	492	0.94

Sequence Information

Coding Sequence: ATGGACTCATTCATTTGTAGAATTTGTCTCGATAAGAGCGGCACTATCTCTGTGTTTGAACATGAGCCGGATAATGTTCAGTACAGCGCTAAGCTGAAGCGCTTGGTAAACATTATGGTCTCTGAAGACGATGGCCTCCCCAGCATGATGTGTGAAGGCTGTGCAAACGAGCTGTCCTTGTCCTATCAGTTCGTCCAGAAATGTGAAGCTTCCGACAAAGCCCTGCGATGTCTGAGCGCTCCAATCGAATTGTACTCTGATCTTCCAGCAGATCTCGAGATAGACGTTAAAATTGAAAGTATCACAAACGAAACTGATGACTGTGATAATCACGGTGACCATTTCATATTGGAAACATGCTCAAAAGATATCTCTAAAGAAAAAGATTGCAGTTCTAACACACAACTAATTAACGAAGTAGAAAAAAACATCCAGAACATTGACAGTGAAACAAATTCTTCAAGAAAACAATGTGATAATACTGATCTCAAAGAATGTAACATTAATGAGGGTAAATTTAGGCGAAAGAAAGTAAAGACAGGCAAATTAGGGCCAGTGCAATGTGATATTTGCGGACACATGACTTGCAGCCCATCTGCTATGGAAATACACATTAGAACACACACTGGTGAAAAACCATTTATATGCAATTCATGTGGATCGAAGTACCCAACTAAAGGCTCTCTGAAGAGACATATTGAAACATATCATTCAAATAGGGAGCGCAGATTTACCTGTGAAACTTGTGGTAGTAGTTTCTTCAGAAAAAATGATATAATCACCCATATAAGAGTTCATACAGATGAACGTCCTTATGGATGTCGTTATTGCTCAAAAAAGTTCCGTCAAGTAGCTTCCAGAAATCGTCATCAAAAAGTACATACTGGTGAAAAACCATATTCCTGCCCCATTTGTAGTAAAAAATTTTCCCAGAAAAGCTTAGTGCAAAAACATCAAAGTGTGCATAGCGATGAGAAAAAATACACTTGTCATATGTGTAACAAATCTGTTAAGTCTCAAACTGCTTTAAGAGTTCATATCAGGCTTCACACAAACGACAAACAGAATGTATGTAGCTTCTGTGGCGTGGCATTTGCTATGAAAGGCAATTTACAAACCCACATCCGGCGCATTCATTCCGAGAAATCAGGCCAATGTTCAGTGTGTCTTAAGACATTCTCAGATCTAGAGGCTCATATGCGAAAACATACCGGTGAAAAACCATACATCTGTGGTATTTGTAACTCCTCATTTGCTGTAAAACGGAGTCTCGCCCACCACATGATGATTAAACATGAAAATGTTGGAAAATTCAAATGTTCTATACCTGACTGCCCTAAAACCTTTCCAACAGCACCAATGCGTGAATTCCATATATTGAAACATCACACAAATCATACTCCCTACCTCTGCCAGCACTGCCCACGACAATTTTTTAGGGCCAGTGACCTTTCTCGTCATTTAAGGGCAAGCCATATGGACTTTAAATCATCAACTAAGTCTTCAAGACCTAAACCTATAACTTATATGTAG
Protein Sequence: MDSFICRICLDKSGTISVFEHEPDNVQYSAKLKRLVNIMVSEDDGLPSMMCEGCANELSLSYQFVQKCEASDKALRCLSAPIELYSDLPADLEIDVKIESITNETDDCDNHGDHFILETCSKDISKEKDCSSNTQLINEVEKNIQNIDSETNSSRKQCDNTDLKECNINEGKFRRKKVKTGKLGPVQCDICGHMTCSPSAMEIHIRTHTGEKPFICNSCGSKYPTKGSLKRHIETYHSNRERRFTCETCGSSFFRKNDIITHIRVHTDERPYGCRYCSKKFRQVASRNRHQKVHTGEKPYSCPICSKKFSQKSLVQKHQSVHSDEKKYTCHMCNKSVKSQTALRVHIRLHTNDKQNVCSFCGVAFAMKGNLQTHIRRIHSEKSGQCSVCLKTFSDLEAHMRKHTGEKPYICGICNSSFAVKRSLAHHMMIKHENVGKFKCSIPDCPKTFPTAPMREFHILKHHTNHTPYLCQHCPRQFFRASDLSRHLRASHMDFKSSTKSSRPKPITYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -