Lcam002471.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990233.1:2741175-2750279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 4.6e-05 0.0041 18.2 3.2 1 21 192 212 192 214 0.96 2 30 0.0032 0.28 12.4 0.2 2 19 242 259 241 261 0.93 3 30 4.1e-05 0.0036 18.3 1.1 3 23 289 310 287 310 0.96 4 30 3.5 3.1e+02 2.8 0.3 2 12 331 341 330 343 0.86 5 30 0.0073 0.65 11.3 0.9 1 23 361 383 361 383 0.97 6 30 0.0021 0.19 13.0 0.1 1 23 402 424 402 424 0.96 7 30 0.00071 0.063 14.4 3.7 2 23 467 488 466 488 0.96 8 30 0.0011 0.096 13.9 4.2 2 23 530 552 530 552 0.97 9 30 0.02 1.8 9.9 1.1 1 23 602 625 602 625 0.95 10 30 0.00096 0.086 14.0 0.2 1 23 677 699 677 699 0.97 11 30 0.0041 0.36 12.0 5.1 2 23 711 732 710 732 0.97 12 30 0.01 0.89 10.8 0.6 2 23 744 765 743 765 0.96 13 30 0.0049 0.44 11.8 0.7 1 23 775 797 775 797 0.98 14 30 0.0045 0.4 11.9 8.6 1 23 826 848 826 848 0.96 15 30 0.00058 0.052 14.7 2.5 1 23 859 881 859 881 0.98 16 30 0.00013 0.012 16.8 0.4 1 23 889 911 889 911 0.97 17 30 0.0014 0.13 13.5 0.3 2 23 931 953 930 953 0.97 18 30 2.8 2.5e+02 3.1 1.0 1 23 971 993 971 993 0.91 19 30 0.099 8.8 7.7 3.7 1 23 1000 1022 1000 1022 0.97 20 30 0.0028 0.25 12.6 2.2 2 23 1033 1055 1032 1055 0.95 21 30 0.002 0.18 13.0 0.2 2 23 1078 1099 1077 1099 0.95 22 30 1.1 1e+02 4.4 0.2 2 20 1103 1121 1102 1122 0.91 23 30 0.0053 0.47 11.7 0.3 2 23 1180 1201 1179 1201 0.94 24 30 3.6 3.2e+02 2.8 5.2 5 23 1211 1229 1209 1229 0.94 25 30 0.031 2.8 9.3 0.9 2 23 1240 1262 1239 1262 0.95 26 30 4.5 4.1e+02 2.5 4.6 2 23 1279 1297 1279 1297 0.87 27 30 0.14 12 7.2 1.8 2 21 1301 1320 1301 1321 0.93 28 30 0.2 18 6.7 0.7 2 23 1369 1390 1368 1390 0.93 29 30 0.0016 0.14 13.4 0.3 2 23 1401 1423 1400 1423 0.95 30 30 1.7 1.5e+02 3.8 3.7 2 21 1461 1480 1460 1481 0.94
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTTGGAAAATGCAGACTGTGTCTCAAGCTCGGCGACTTCTACTCCATCTTCACGATGGACAACAACTTGCAACTCGCCGAAATGGTCATGGAATGCGCCAGAATAAAGATATTCGAAGGTGATGGACTGCCAGATAAAATTTGCAGCGAATGTATTCAAAAACTGAGTAGCGCGCACATATTTAAACAACAATGCGAACGATCTGATCAAGAACTACGACGAAACTATGTTCCGCCACCAGGTTTTAGTTCACCGACGCCACCAAATAGACAGAGCAGTGATTCTGCTTTTTCTTCCCAAACCGAAACATCTAAACCCTCAACAACCACAGAGACCAAAGTAACACCTACAAACAGGACACGTAAACGAAGTCGAGACAGTATAGACAATGCCTCCTCCAGCGGTCGCTCTCATGACTATCAGCCAGGAAGTTCCAAGCGCGTTGATGAATTACGCTTTTCGCAAAAGAAACCGAGATATTCCGCAAACTCTGATTCTGAGTATGAGGATAACTGTGGTTCCCCATATTCGGGGGGCACAGACTCTGATGAGCCTTTAAATTATAAGTGCAAGCAATGCCCCAAGGCGTTCAAGTCGCGGCCAAGTTTGACAGCTCACATGAAATGTCATAAGAATAAAATCATCAAAACACCAGCCCAACCCGCGCCGGTTGTAGAAATTAAGGACGCTACTGATGATACTAATAAACTTAACTGCGAAAAGTGTGGAAAAGAATTCAAACTGAAAATAATGCTGAAGCGCCATGCTGAATTTTGCTCTAAATCTCCTCGAAAGGAACTCCTGGTATCGTTGGAACCCTTGGATATAGTGCAAACGGCCGTCAAAATAGACTGCCCTATGTGCACAATTAAGTTCAAAACTATTGAAAACTTAGAGAAGCATATGAGAATTTGTCATGCAGCTGTCCTAAAGAAGGAAGAGCCGATAGCAACTAATGAAAATGGAAAAATATGCGTCCCTTGTTTCTATTGTGGTGAAGTGTTCGAAGATTACTACATACATATTGCTCATTTCAACGTATGCGCGCAAAAAACTGATGCCGTCATATTTGAATGTACAGTTTGCAAAAAAACGTTAGCCAAGAAAGCGAGCTACTTTTTACATTTGAAAGCGCATTTTTTTCCTGTAACTCCTGCCAAGAAATCTTCAGAAATAACTAAATCGAATGGTTTTCCATGTCGAATTTGTAATAAAATATTGCCAAATCAGAAGTCGTTAATCAATCATTTGTCGGCTCACGGCTGGCTGTCAAATTTAGATGATGCTGACGATGGCGGCGACGAAGATGAATCCAGAGCGAGTACGATGGATGAAACTGGTTCGGTACATTCGGAATATAGCTGTAGCGTGTCGACTGGGCCACTAAAATGCAGATTTTGTAATAAGTCGTTCAAGTATAAGAAATCTTTAGAGACCCATGAATTAAAACATTCGCAAGATAATGTAAAGAATGAGATGCCAGATACGTCCGCGGATCATCTGTTAAACGAAACGAACGAATCTTACAATCAGGATGAATCCGAATCTAGTCAAGATGAAGGTGAAGATGACAACACTTGCGATATATGCGAAAAGCAGTTCTCATACAAAAGACTACTGTTGCATCATAAGAGAACAAAACACAACATGACATCGGGTACAAAGAGAGCTAAAATAAACTTAAAAGATTGCTCAGTCCGCTGCTTGATATGCGATATAGAGATGAAAGTGAGCGCAATCAACGAACACAACCAAACTCATATATCAGTCAACATTAAACCTAGAAATCTCTACACGTGCATTGAATGCAGTCAGCAATTCAAGAGTTGTAGTGGTTTAGCCAATCATATAAAGCTGGTGCATCGGTTGAAGCAGGCTCCTATAACGGTAGCGGCGGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGACTATATCCAGAGTCACAACGGCTTTGAGGATTCCGCCGGCAATGGCGCCCCACTCGTCAATCTGAGTGGTTTCACTTGCCCCATCTGCAGCAAGCAACTGCCGACTCTGATATCTCTTAAACGTCATGTCAATTGGCACAACAATGTCGGTAAGACTTTGGAGAAGAAACTGGAGTGTTTTGTATGTAAAGAGGTGTTCAGATTTCAATGTCACTACAAGATGCACATGCGCGTGCACTACAATGACACAAATATAGATCCCAAACATCTCGTCTGTCCTATTTGTAATCGAAAAAGCAAGCATCTCCGTGCCGCGCAAGCGCACATGAATTATCACAAACAAACTAGATTTCAAAACAAAGATTATGAATGCTCAATTTGTAAAAGAGTATTCCAATATAGAAAAGTTTACCTCTCTCACATGGCAATACACTACAAACGCGGGGAAAGCGTCAATAACACTGTTGTTGGCTCCGTCCTGCCGAATTCGGTCGATAGAAATGTATTCGACGGGACTCACACATGTCATCATTGTGGCAAGGTTTGTGATTCGGAGACTTCTCTGAAGCACCACATTATTTGGCATAAATCTAAAACTTCGTTGTACGGAGCTCGACACGAATGCGACATCTGCAATGTGCAATTCACTAATAAGAGAAGACTCGAGTTACACACGAGGACACATTTTGAAGATGAGAATGGTCCTTTCAAGTGCCAAATATGTGGCAAAGGATTTATAGCCGAAGATTATTTCAAAAGGCATGTAAAAGGACACAATTTTGATCACCAGTCACATAAAAAGCGGATAGAAAAATTAAGAAAAAACAAAGTAAAGTGTCCTATATGTACTCGATATTATCCAGATTTAGTGAAACTGATTCGTCATTTGAAACGGACACATCCTGAAAGCAAAATGATCAAAGAAGATCCGGATGCTCCTCCTCCTAATTATTACTCATGCAAATTGTGTGCTAAAGAATTCCTTGATGAACGAAGACTACAGCACCACGAGGAAGCACATTTACGAAAACCGGAGTTCTTCAAATGTAAATTCTGTGGCAAAAAGACTATTTCACTTAAGAATCATAGGGTCCATATCAAGGGCCATCTTACCCAAAAATATATCGACGATCCAATAAAATGTGAGCACTGTGAGGAAACATTTACTAGGGGATACGACCTACATTACCATTTAAAAGAAGCTCACGGAATCGACGAGACCTGGATAGCAGAACGTGGCGTGCAAACCCCCGATGGTCCGTTAAAAGAACTACAATGCTCCATATGCTACAAAATATTAGCAAGTAAAGGAAACTTTGAAAGGCACATTGATTATCACAACACGTTACGTTGCAATTACTGCTTCGAGTACTTTACTGGTTCACGTTTCCTGGAGGGACATTTAGCATTCAGTTGCGAAAAGAAGAAAATTATTGGCGAAACTGAAATTTATCCAAGGAAAATTAAGTGCTATGTTTGTTACAAAGCCTTCCATTTGCAAGTGAAGTTAGATTGTCACCTTCGTACTAAACATGACATCCGGGTATTCAAAGAGGAGTCTGAGGGCAAAAAGGAACTTGTATGCGATTACTGCTTTAGAGTATTCGAGAATGAATATGCTCTCAGTACCCACAAGATCTATCACCGTACCGTTGGCTACTTTGGCTGTATATATTGCAATAGGAAGTTCAACACCATGACGCTGTACAGGAAACACAAGAATCATCACTACACACAACTTAATGTGGAAGAACCGACCAAGTGTGAACATTGTGATGAAAAATTTGTTGCTTTTAGAGAAATGATCTATCACATGAGGGATGTACATGGTGATGATAAGGAGTGGGTGGTCCTACCTAAAGAATCTATTGAAGAGGAATGTAATATTTGTCACAAAATTTTCTTCAATCTTCACAAACATTTGGCATATCATGAAGAGAACAGGTGCAAGAAATGTGGAGAATATTTCTATTCAAGGCAAGACTTTGATAACCATCTCTGTGCTATAGAGAGCGACGACGAGGTCGTTGAAGTAGTTGAGGGACTCCGACCAGTTTATGAAGAATGCAAATTCTGCTTCAAGCCTATAACCAGGAAGAACTCAAAGAGATTGCACGACCAAATGCATAGAGTATCTGGTTCCATTTCATGCCGATTCTGTAACCTTAAGTTTAAAACTATAGATGCTTTTAATATTCACGCATTCTCCCACCGGAGCAGGAAATATAATAAAAAACCTATCAAATGCCGAAAATGTGGTGAAACGTTTGTGAAGTACGGTCCGTTTATAAAACATATGAAGGAGGTTCACAAGTGTTTCAAGAAGATACATTATAGAGCGAGAGTTTTGGCTGAAAAATGTGTTGTGTGTCATGAAAAGTTCCCCAACCTACACAACCACTATCGCGCTCACCTGCTAAACCAGTGCCTTCAGTGTCTTAAATTTTTCACATCCTTTAAACTGTTTAATAACCATCAGTGCGATAAAGAGGACGCCGATCCCTCTAAAGTGTTTACGTGTGATGCGAATTTGTCTGATCTCATTGACTCTTACATACCAAAAGACGAGAAGGATGATGAGAAATATTATGGCTACGAAGAAAATGGACAGGGACAAGTGAATGTTGGAGTAGAAGAAGAGACACTAAAAACGGAGTTGCTATCGCAAGATGAGGACAGTCAGAACTCTATCGATATACAGGAGAGCGAAGTTCACGAGATGGTGCATGCGCCTATTATATCAGATGTGCTCTCGCTTTACAAGAACCAGGAAGAGAAAGCGAATAACGATGACGGGGATGACGTGGTCGTTCTCACCGATGAAGAGGGTTCTGTTGATTTTCAAGAAACGTTAACTGTTATAACTATTGAAGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECARIKIFEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSPTPPNRQSSDSAFSSQTETSKPSTTTETKVTPTNRTRKRSRDSIDNASSSGRSHDYQPGSSKRVDELRFSQKKPRYSANSDSEYEDNCGSPYSGGTDSDEPLNYKCKQCPKAFKSRPSLTAHMKCHKNKIIKTPAQPAPVVEIKDATDDTNKLNCEKCGKEFKLKIMLKRHAEFCSKSPRKELLVSLEPLDIVQTAVKIDCPMCTIKFKTIENLEKHMRICHAAVLKKEEPIATNENGKICVPCFYCGEVFEDYYIHIAHFNVCAQKTDAVIFECTVCKKTLAKKASYFLHLKAHFFPVTPAKKSSEITKSNGFPCRICNKILPNQKSLINHLSAHGWLSNLDDADDGGDEDESRASTMDETGSVHSEYSCSVSTGPLKCRFCNKSFKYKKSLETHELKHSQDNVKNEMPDTSADHLLNETNESYNQDESESSQDEGEDDNTCDICEKQFSYKRLLLHHKRTKHNMTSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQTHISVNIKPRNLYTCIECSQQFKSCSGLANHIKLVHRLKQAPITVAAELADFCEVVVTKAEPLDYIQSHNGFEDSAGNGAPLVNLSGFTCPICSKQLPTLISLKRHVNWHNNVGKTLEKKLECFVCKEVFRFQCHYKMHMRVHYNDTNIDPKHLVCPICNRKSKHLRAAQAHMNYHKQTRFQNKDYECSICKRVFQYRKVYLSHMAIHYKRGESVNNTVVGSVLPNSVDRNVFDGTHTCHHCGKVCDSETSLKHHIIWHKSKTSLYGARHECDICNVQFTNKRRLELHTRTHFEDENGPFKCQICGKGFIAEDYFKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICTRYYPDLVKLIRHLKRTHPESKMIKEDPDAPPPNYYSCKLCAKEFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYIDDPIKCEHCEETFTRGYDLHYHLKEAHGIDETWIAERGVQTPDGPLKELQCSICYKILASKGNFERHIDYHNTLRCNYCFEYFTGSRFLEGHLAFSCEKKKIIGETEIYPRKIKCYVCYKAFHLQVKLDCHLRTKHDIRVFKEESEGKKELVCDYCFRVFENEYALSTHKIYHRTVGYFGCIYCNRKFNTMTLYRKHKNHHYTQLNVEEPTKCEHCDEKFVAFREMIYHMRDVHGDDKEWVVLPKESIEEECNICHKIFFNLHKHLAYHEENRCKKCGEYFYSRQDFDNHLCAIESDDEVVEVVEGLRPVYEECKFCFKPITRKNSKRLHDQMHRVSGSISCRFCNLKFKTIDAFNIHAFSHRSRKYNKKPIKCRKCGETFVKYGPFIKHMKEVHKCFKKIHYRARVLAEKCVVCHEKFPNLHNHYRAHLLNQCLQCLKFFTSFKLFNNHQCDKEDADPSKVFTCDANLSDLIDSYIPKDEKDDEKYYGYEENGQGQVNVGVEEETLKTELLSQDEDSQNSIDIQESEVHEMVHAPIISDVLSLYKNQEEKANNDDGDDVVVLTDEEGSVDFQETLTVITIED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -