Lcam015801.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:6035837-6040520[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.098 8.7 7.7 0.7 1 20 52 71 52 73 0.95 2 29 3.9 3.5e+02 2.7 0.1 3 23 102 122 101 122 0.92 3 29 0.0081 0.72 11.1 0.4 2 23 145 166 144 166 0.97 4 29 0.02 1.8 9.9 0.1 1 23 170 192 170 192 0.95 5 29 1.4 1.3e+02 4.0 0.6 1 14 197 210 197 220 0.78 6 29 0.057 5.1 8.4 0.2 1 23 226 249 226 249 0.94 7 29 0.0023 0.21 12.8 1.2 1 23 256 279 256 279 0.98 8 29 2.8e-05 0.0025 18.8 1.9 1 23 286 308 286 308 0.98 9 29 0.0019 0.17 13.1 0.8 1 23 391 414 391 414 0.96 10 29 3.1 2.8e+02 3.0 0.2 2 23 441 463 440 463 0.89 11 29 0.34 30 6.0 0.5 1 23 485 507 485 507 0.97 12 29 5.6e-05 0.005 17.9 1.7 1 23 511 533 511 533 0.98 13 29 0.89 80 4.7 1.1 1 21 538 558 538 561 0.78 14 29 0.0035 0.31 12.3 0.4 1 21 567 587 567 590 0.90 15 29 0.0064 0.57 11.4 1.6 1 23 597 620 597 620 0.97 16 29 0.4 35 5.8 0.1 3 23 671 691 670 691 0.94 17 29 0.072 6.4 8.1 0.2 1 23 760 782 760 782 0.98 18 29 0.00035 0.031 15.4 3.7 1 23 786 808 786 808 0.98 19 29 0.099 8.8 7.7 1.4 1 23 842 865 842 865 0.93 20 29 0.0061 0.54 11.5 0.7 1 23 913 935 913 935 0.96 21 29 0.0019 0.17 13.1 0.1 2 23 959 981 958 981 0.94 22 29 6.9 6.2e+02 1.9 4.2 5 23 1007 1025 1004 1025 0.92 23 29 0.013 1.1 10.5 4.1 3 23 1031 1051 1030 1051 0.97 24 29 0.0026 0.23 12.7 1.6 1 23 1058 1081 1058 1081 0.96 25 29 0.014 1.2 10.4 1.9 1 23 1087 1110 1087 1110 0.96 26 29 0.035 3.1 9.1 0.8 1 23 1116 1139 1116 1139 0.97 27 29 0.00028 0.025 15.7 1.1 1 23 1145 1167 1145 1167 0.97 28 29 7.2e-06 0.00064 20.7 1.8 1 23 1173 1195 1173 1195 0.99 29 29 0.0019 0.17 13.1 6.0 1 23 1201 1223 1201 1224 0.96
Sequence Information
- Coding Sequence
- ATGTCAGCTGAAAGATTATTAGATGGTAAAGTTATTGAAAAAAGACGCTATCAAAGAAGCGCGAGAGCTGAAGCCAGATTTATGACTAAGAAGAATGCAAGTGCCATACTCGAATGTTGGTCTTTGTGTCCGTTTAGATGGAAAAAGAATAGATTTAAATGCGCGTACTGTGAAGATAACTTTACAGAATGTTCTGAACTTAGAGCTCACGTTACGTTATGCTCGACTCAACACAGCATTAAAGATATTTACAGCAAATTTAAAGAAATGTCACTTATAAATGTTGATATCACTGAAGCTATGTGTAGAATTTGCGCGATGCCATTTCAAGATGTTACAGAAATGAGGAGACATGTTGTAGAACATGGATACGATATGGATGCTGCACATCCAGATGGTGTTCTACCATTTTGTTTAGACAAAGAGTCTTGGAGATGTGTTATATGTCAAGAAATATTTAATAACTTCCTAAAACTGTATGAACATATGAATACCCACTATCAGCATTATATCTGTGCAACTTGCGGAAAAGGATACATGACTGCACCTCGATTGCGTAAACATTCCGAAGTACACATTACTGGTACTTTTCCATGCGACAAATGCAGGCGGGTTTTCAATATGCGTGCAGCTAGGGACTACCACAAAGCTCATGCTCATGCTAAGGGTCCACGATATGAATGTCCGCAGTGTAATATGAGATTTGGAGGTTATTATGAAAGAATGAATCATTTGAATGAAGCACATAGAGAAAAGGAAGTTTCTTATAAATGTGCGCATTGCGAATTATCCTTCAAAACCAGTGGAAAGCGAGCTATCCACGTACGATCCATACATTTCCCACAGCAGCGTAATTTTTCTTGTCCATTTTGTAAATGGTTTTTTAAAACAGGATATGAATTAAAAAGACATATGATCAAACATACAGGTTCCGCTAACGCGGGTATTCAAGAAGTTTGTGATCTAATCACGGTGAATATAAGGAAACAAAAAAAAGTCAGGAGATTAAAAGAGAATGTGTGCGCCAGGCAGATGCGTCGCAGGAGACGGGCCAACAATATACTCCCAGAGGAATCTGAGAGTCGAATATCCAAAACAATGATGCGCAGAAATGCTATAACGATTCTAGAATGTTCTACTGCATGGGCCTTCAGATGGTGCCATAGTGCATTTTTCTGCTCTTATTGTGATAATAAATTTATAGATCCAATACTCTTACGTGAACACGTCAAAAAATTTCATCTTGTCGATGCGCCCACTGAACGAATATTTTCCAAGCTTACAGAAAATAACATGGTTAAGATAGAAGTGTCAGAATTGAATTGTAAATTATGTAACAAAGCGCTACAGAATGTAGAGATTTTAAAGAATCATCTTATATCTGATCATGGAAAAACTATCTATGTGGATTTTAACGATGGCGTTATACCGTTCATACTGGAATCCAACAAATTCGTCTGCCAAAAATGTGATGCAGAGTTTTGGAGCTTTACTAAAATCAATACACATATGAACATACATTACACAAATTATGTTTGCCATACATGTGGGAAAGCTTTTGTATCAAAATCGCGTATAAGAAACCATGTGCAATCGCACGAAATTGGAAAATTCTCTTGTGGAGATTGTACTCAAGTTTTTATAACAAGAGCTGCAAGGATGTGCCACAGGTTGAAAATACATAAAAAAAGTGTGAGATACAAATGTCCACTTTGTCCCGAGGCATTTACTACTTATTACGCTAGATCTAAACATTTAGTAGACAGACATGATCAAACAAAGAGGGTCTATGAGTGTCTTTCATGCGGAAAATTATTTGACTCAAGTTGTAAACTTTCAACACACGTTCGTTCTGCTCATAAAAGCCCAGAAGACGTGGATGCAAGAGACCATTCAATAAGGATAGAATGGAAAAAGAAACCCAAGATTAAGGCTTGCAAAGTTAATGCAGCCATGATTCTCGAATATTCCAACGCTGTAGTTTTTAGATGGGCCCGTGGTAAACTGTTATGCGCTTATTGCCCAGAAATATTTCAAAACGTGTCAGATATAAGAAAACACTCCGATATACACGATAAACTTGAAGTGCTATTGAAGCCAAAAGTGCGGAACTCATTTCCTCTCAAAATAGACATAACGGATTTAAAGTGCAAATTATGTTGTAGTAATTTTAAAAAGTTGAAAGATTTCAAAGTTCACCTGACTATGTTACACAGCCACAAGTTTGATCCAGATTATGGTGATGATGTGATTCCTTTCATTTTGACTGCATCGGAATACAGATGTGTAATTTGCGATGATTTATTTGATAGTTACATCAGTTTATTGACACACATGAACAATCATTACCAAAGTTTTGTTTGTTACACCTGCGGTAAAGGATATTCGGCTAAACATAAGCTGCGAACACACCAAAAAACCCACGAGTCTGGTAAAGTACCATGTTCAAGATGTGATATGATATTTCCGAACCACGTTATCAAAAATAGACATGTTATTTCTGTACATAGATCAAAGAAAAGGTATCGTTGCCCGATTTGTGAGATGGGTTTTGAGTCGTGCCACTCGAGGTTGGTACACCTTGGCAAAGTACATGGACAGAAAAGTGAATATCGCTGGACGATCAACACATTAATATGGAAACGAAGGCGCAGGCTATTTAACGATCAGAGAGATAACGCCGCAACCATATTAGAGTACTCGAATGTACGTCCTTTCCGTTGGAAACGCGGCGCGTTTGCTTGTTCACATTGTCCACAAACTTTCGGGAATTTTAATGATGTTAGTATTCATATGCAAGAACATCCCGATCGTCTTGACGCCATGCGTTTCGCTAGACCATATGATAATATCAAGATAGAAATAAGTGACCTTAAATGCGAAATTTGCCAAGAAAGCTTGAGAGACTTAGATAACCTGATCGACCATTTGTCTAATATTCACCAAAAGAGAATACTTAAAGATTTTCCCTTGGGCGTCACTCCTTTCATATTAAGGGATAAGGAAATGTTTTGCATACATTGCGGCGAATGTTTCTTGCTATTTTCGAAACTCAACAGTCATATGAACCAACACTATCCCAACAATATATGTTGTCACTGTGGGAAATCTTTTGTAGGTGTTCATCGACTCAAAGCTCACCAACTAATCCATGAAACCAGTAGTCAAGAGTATAAGTGTGCCAAATGCAATGAAGTTTTCAAGACACGTGCTTTAAAAAATTATCACATAAAATTGAAGCACGCTGGAGAAAATCGATACAGATGTCCATTTTGCGAAATATCTTTTAAACGTTATTTAGATAGAGTGCGTCATCTAAAACAATTCCATGATCAGAGCGTAGAATATCCATGTAACTTGTGTTCAGCAGTTTTCGCCATGTGCGATCAGAGAACTAAGCACGTTAGAAATGTTCATATAAAAGATAAGCAATTTCAATGTGATTTTTGTCCTAGCAAATTCGTTACTAAGGGCCAGCTAAAGAACCATTTGGTGAAACATAGCGACCTTAAAGAGTTCCAGTGTGATGTTTGTAAAAAGAGTTATGCGAGAGCTAGAACATTACATGAACATATGAGAATACATAACAACGATAGGAGATTTGTCTGCAAATTTTGTAATAATGCTTTTATTCAAAAATGCAGCCTGAAAAGCCACGTCAGAACACATCACCCGGAATCGTTTAAAATTACAGTCTAA
- Protein Sequence
- MSAERLLDGKVIEKRRYQRSARAEARFMTKKNASAILECWSLCPFRWKKNRFKCAYCEDNFTECSELRAHVTLCSTQHSIKDIYSKFKEMSLINVDITEAMCRICAMPFQDVTEMRRHVVEHGYDMDAAHPDGVLPFCLDKESWRCVICQEIFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCRRVFNMRAARDYHKAHAHAKGPRYECPQCNMRFGGYYERMNHLNEAHREKEVSYKCAHCELSFKTSGKRAIHVRSIHFPQQRNFSCPFCKWFFKTGYELKRHMIKHTGSANAGIQEVCDLITVNIRKQKKVRRLKENVCARQMRRRRRANNILPEESESRISKTMMRRNAITILECSTAWAFRWCHSAFFCSYCDNKFIDPILLREHVKKFHLVDAPTERIFSKLTENNMVKIEVSELNCKLCNKALQNVEILKNHLISDHGKTIYVDFNDGVIPFILESNKFVCQKCDAEFWSFTKINTHMNIHYTNYVCHTCGKAFVSKSRIRNHVQSHEIGKFSCGDCTQVFITRAARMCHRLKIHKKSVRYKCPLCPEAFTTYYARSKHLVDRHDQTKRVYECLSCGKLFDSSCKLSTHVRSAHKSPEDVDARDHSIRIEWKKKPKIKACKVNAAMILEYSNAVVFRWARGKLLCAYCPEIFQNVSDIRKHSDIHDKLEVLLKPKVRNSFPLKIDITDLKCKLCCSNFKKLKDFKVHLTMLHSHKFDPDYGDDVIPFILTASEYRCVICDDLFDSYISLLTHMNNHYQSFVCYTCGKGYSAKHKLRTHQKTHESGKVPCSRCDMIFPNHVIKNRHVISVHRSKKRYRCPICEMGFESCHSRLVHLGKVHGQKSEYRWTINTLIWKRRRRLFNDQRDNAATILEYSNVRPFRWKRGAFACSHCPQTFGNFNDVSIHMQEHPDRLDAMRFARPYDNIKIEISDLKCEICQESLRDLDNLIDHLSNIHQKRILKDFPLGVTPFILRDKEMFCIHCGECFLLFSKLNSHMNQHYPNNICCHCGKSFVGVHRLKAHQLIHETSSQEYKCAKCNEVFKTRALKNYHIKLKHAGENRYRCPFCEISFKRYLDRVRHLKQFHDQSVEYPCNLCSAVFAMCDQRTKHVRNVHIKDKQFQCDFCPSKFVTKGQLKNHLVKHSDLKEFQCDVCKKSYARARTLHEHMRIHNNDRRFVCKFCNNAFIQKCSLKSHVRTHHPESFKITV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -