Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990238.1:2878644-2891550[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.7 8.7e+02 1.4 3.0 3 14 131 142 131 150 0.84

2 15 0.00018 0.016 16.3 2.6 2 23 157 178 156 178 0.97

3 15 0.032 2.8 9.3 0.4 2 23 209 230 208 230 0.97

4 15 0.00091 0.081 14.1 0.9 1 23 239 261 239 261 0.98

5 15 0.0038 0.34 12.1 1.3 2 23 293 315 292 315 0.91

6 15 0.014 1.3 10.4 1.4 1 23 325 347 325 347 0.97

7 15 2.7e-06 0.00024 22.1 1.5 1 23 357 379 357 379 0.97

8 15 2.8e-07 2.5e-05 25.1 1.9 1 23 385 407 385 407 0.99

9 15 6.7e-06 0.0006 20.8 4.1 1 23 413 435 413 435 0.98

10 15 8.3e-08 7.4e-06 26.8 1.2 1 23 441 463 441 463 0.96

11 15 0.034 3 9.2 5.8 1 23 469 491 469 491 0.95

12 15 1.4e-06 0.00013 23.0 0.7 1 23 497 519 497 519 0.98

13 15 0.0023 0.2 12.9 7.1 1 23 525 547 525 547 0.97

14 15 1.5e-07 1.4e-05 26.0 1.7 1 23 553 575 553 575 0.99

15 15 0.0027 0.24 12.6 0.4 1 20 581 600 581 603 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.7	8.7e+02	1.4	3.0	3	14	131	142	131	150	0.84
2	15	0.00018	0.016	16.3	2.6	2	23	157	178	156	178	0.97
3	15	0.032	2.8	9.3	0.4	2	23	209	230	208	230	0.97
4	15	0.00091	0.081	14.1	0.9	1	23	239	261	239	261	0.98
5	15	0.0038	0.34	12.1	1.3	2	23	293	315	292	315	0.91
6	15	0.014	1.3	10.4	1.4	1	23	325	347	325	347	0.97
7	15	2.7e-06	0.00024	22.1	1.5	1	23	357	379	357	379	0.97
8	15	2.8e-07	2.5e-05	25.1	1.9	1	23	385	407	385	407	0.99
9	15	6.7e-06	0.0006	20.8	4.1	1	23	413	435	413	435	0.98
10	15	8.3e-08	7.4e-06	26.8	1.2	1	23	441	463	441	463	0.96
11	15	0.034	3	9.2	5.8	1	23	469	491	469	491	0.95
12	15	1.4e-06	0.00013	23.0	0.7	1	23	497	519	497	519	0.98
13	15	0.0023	0.2	12.9	7.1	1	23	525	547	525	547	0.97
14	15	1.5e-07	1.4e-05	26.0	1.7	1	23	553	575	553	575	0.99
15	15	0.0027	0.24	12.6	0.4	1	20	581	600	581	603	0.94

Sequence Information

Coding Sequence: ATGGCAGATTTTGAAAAAACTTGTCGAACGTGTATGAAAAGTGGTAGATCATTAGTTGATTTATTTGGTCCACTCAAAATCGAAAATAGCTCTAGATTAAAACTGGCCGATGTTTTAATGGAAGCTATACCTTTGCAGATCACTCAAGAAGATGGTCTACCACAAAAACTTTGTGATGAATGTACAAATATCATTCAAGTATTCCATACATTTCGGAATCAAGCACTCCATTGTGACAATGAACTTAAACAGCTTTTACCCACTGCTACTATAAAAAAAGAAAATGCAGATGATGTTGTAAAATTTGAAAATGAGTATATCTATAGTACTAACTATGACAACTACTACTATGATAATGTAGTACCGAACTTTGAGAATGAGGTCCATTGGTGTAAGACTTGCAATAAGGTTTATAACCATCACCATATTCTTTTGGGACATAGTTGCAAAAAGAAAGTGGGTGTTTTGGAATGTCCCATTTGTGCAAATAAATTTTCCACAAAGCACCAATTTAAATTACATATGAATAAGCATTTTGAGAAAAATGAGTTTGTGAACACAGTACCATCAGCAGAAGAAAGTGATGATGAGGTTGGAGTGAAGTGGGATACTCAACTTAATTTAAAATGTCCAGAATGTGCTCTAGTATATCACAGTGAGAAATCACTGTTGTTACATTTGGAAAAACATAAAGGTACCCTTAAAGGTGAACCATTTAAATGTAACAAATGTGGTGAACAGTTCATTTTGGCAACATCATTTATTGAGCATAAGAATCGACACATGTATGATTCTAGATATGACAGTAACTATGAGAATAGATATGATACTGCATTTGATTCTGAGTATGATGCTGGATATGATACTTACCGACTCAGGTGCTTACAATGCTACATTAGTTTTCGTAATGAAGATCAACTTGAAAGACATAATATGGAGTGCCATAGGAATTACATAAAACAGGACAATTTGTTTACATGCTCAACATGCAGTCTTGAATTTGATTCATATAATTCTCTTGAATCCCACTTTAAAGAACATGCAATTTCAATTAAGGAAAAAAAGAAGTTTAAATGTGACCACTGTGACAAAGGATTTACTTCAAAGGGCCCCCTTAAACGCCATCTTGCATTGCATTCTGAGGATAGGCCTTTCAGATGCACCAAGTGTCCTAAGAGATATTCTCGGCAAGATGCTCTGGTTACACACATGAGGAAACATAATGGTATTAAGCCCTATGCTTGTCAACATTGTGATAAAGCTTTCAATCAGCTATGTTCTCTTAAAGACCATATAAGGACCCACACTGGGGAAACTCCATTCCTATGTTCTGAGTGCGGTAAGGGCTTCAATAACAGCTCCAACCTCCGACAGCATCTCAGACGTCATACTGGGATTAAGCCATTCGCCTGCACTTTGTGTCCTAAGACATTTTGTACTAAAGGTCAAATGAAATGCCACACGGACACACACTTAGATGTTCACCCATACCAGTGCAGCGAGTGTGGAGCAACATTCACCAAACCCAATTCACTGAAGAAACACAAGATGATCCATCTCGGCATCAAGCCTTTTGCTTGTGACAGTTGCAACATGAGTTTCACCTGCAAGGACCACCTGAAGCGCCACCAGCGCAAGCACACTGGCGAGAAGCCCTACAAGTGCACGCAGTGCGAGCGCGCTTTCACGCAGAGCAATGACCTCATCAAGCACATGCGCCGCCACATGGGACAGGACATCTACTCATGCACTGTATGTGGAGCTAAATTCAGACTGATGAGGGAGCTCAAACGTCACTACCCAATACATTACAGCGGAACTGAAACAACTACCCTCATGGAGAAACCGCTCATTGTAGTCAAGGAATCTAATAACATGGAGAATACTAATAAAGCTGCGGAAGGCCAAATTACTATTACTTTCAACAGGAATTTATTGGATAAAGACAGTTCTGGGGATATCACTATTAACATAGGAGCAGAGAGAATCAATTAA
Protein Sequence: MADFEKTCRTCMKSGRSLVDLFGPLKIENSSRLKLADVLMEAIPLQITQEDGLPQKLCDECTNIIQVFHTFRNQALHCDNELKQLLPTATIKKENADDVVKFENEYIYSTNYDNYYYDNVVPNFENEVHWCKTCNKVYNHHHILLGHSCKKKVGVLECPICANKFSTKHQFKLHMNKHFEKNEFVNTVPSAEESDDEVGVKWDTQLNLKCPECALVYHSEKSLLLHLEKHKGTLKGEPFKCNKCGEQFILATSFIEHKNRHMYDSRYDSNYENRYDTAFDSEYDAGYDTYRLRCLQCYISFRNEDQLERHNMECHRNYIKQDNLFTCSTCSLEFDSYNSLESHFKEHAISIKEKKKFKCDHCDKGFTSKGPLKRHLALHSEDRPFRCTKCPKRYSRQDALVTHMRKHNGIKPYACQHCDKAFNQLCSLKDHIRTHTGETPFLCSECGKGFNNSSNLRQHLRRHTGIKPFACTLCPKTFCTKGQMKCHTDTHLDVHPYQCSECGATFTKPNSLKKHKMIHLGIKPFACDSCNMSFTCKDHLKRHQRKHTGEKPYKCTQCERAFTQSNDLIKHMRRHMGQDIYSCTVCGAKFRLMRELKRHYPIHYSGTETTTLMEKPLIVVKESNNMENTNKAAEGQITITFNRNLLDKDSSGDITINIGAERIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -