Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990244.1:4081239-4097845[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1e-05 0.001 20.1 4.3 1 23 190 212 190 212 0.98

2 13 1e-06 9.2e-05 23.4 0.4 2 23 225 246 225 246 0.98

3 13 2.5e-05 0.0023 19.0 3.1 2 23 255 276 255 276 0.98

4 13 0.00027 0.024 15.8 2.1 1 23 282 304 282 304 0.98

5 13 2.4e-05 0.0022 19.1 3.3 1 23 310 332 310 332 0.98

6 13 1.4e-05 0.0013 19.8 8.4 2 23 339 360 338 360 0.97

7 13 7.1e-06 0.00063 20.7 0.7 1 23 366 388 366 388 0.98

8 13 4.6e-07 4.1e-05 24.5 0.9 1 23 394 416 394 416 0.99

9 13 0.0023 0.21 12.8 0.2 1 23 422 444 422 444 0.97

10 13 0.0016 0.15 13.3 1.9 1 23 450 472 450 472 0.97

11 13 0.00011 0.01 17.0 0.5 3 23 480 500 478 500 0.98

12 13 9.3e-06 0.00083 20.4 1.6 1 23 506 528 506 528 0.99

13 13 0.0027 0.24 12.6 3.9 1 23 583 605 583 605 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1e-05	0.001	20.1	4.3	1	23	190	212	190	212	0.98
2	13	1e-06	9.2e-05	23.4	0.4	2	23	225	246	225	246	0.98
3	13	2.5e-05	0.0023	19.0	3.1	2	23	255	276	255	276	0.98
4	13	0.00027	0.024	15.8	2.1	1	23	282	304	282	304	0.98
5	13	2.4e-05	0.0022	19.1	3.3	1	23	310	332	310	332	0.98
6	13	1.4e-05	0.0013	19.8	8.4	2	23	339	360	338	360	0.97
7	13	7.1e-06	0.00063	20.7	0.7	1	23	366	388	366	388	0.98
8	13	4.6e-07	4.1e-05	24.5	0.9	1	23	394	416	394	416	0.99
9	13	0.0023	0.21	12.8	0.2	1	23	422	444	422	444	0.97
10	13	0.0016	0.15	13.3	1.9	1	23	450	472	450	472	0.97
11	13	0.00011	0.01	17.0	0.5	3	23	480	500	478	500	0.98
12	13	9.3e-06	0.00083	20.4	1.6	1	23	506	528	506	528	0.99
13	13	0.0027	0.24	12.6	3.9	1	23	583	605	583	605	0.98

Sequence Information

Coding Sequence: ATGGCTGCCGCTACTAAAAAACAGAGTTATAATTTCGAGAAGATATGCCGCGCTTGCTTGCAGATAAAAAAGGACATGCGTCCCTTATTCGAACAACTTACTGCGACTATGTTAATGGGGATTTCAAAAGTGCAGGTGGCAGTTGGTGATGGTCTCCCAACACAGCTATGCTTGCAATGTGTACATCAAATATCAAGATGTCATGCATTTAAGGAACTTGTTGAGAGAAATGATGTCTTACTGCGGGAGCAGGCGAAGGTAATGGCTGAGGAAGCGTTAAAAGAAAATTTGCTGAAAGAAAAAGACTTAAACGCAGTATACAGAAACATACAATTTATAGAAGTACCATCACTGAACAGTAATCAGATTTTAGAAGGATTTTTCACGGATACAGCAGAACAGAGTAATATTACACAAGAAATATTAAAGAAAGAAGAATTTGATATAGATAAGCTAACTCCAGAAGCAGTTCAAGAACAAAAATCAGATGAAGGTTTAAATTCGGATGAGGAGAATTATTTACAAATGGTTGTGTTCCAAGCCACGTCATCAGTGGCTCCAGGACGCCATGTTTGCAACCTCTGCCACAAGGAGTTCAAGACTGCGAGATGGTTGAAATTACATATGCGTTCACATTCTAATTGGATAAAGGCGAATTGTAAAAAGCCACCCAAATGTCCGATATGCGAGAGAACATTTAAGGGTCCCGGTATGTTGAAAATGCACATGCGTACACATGAGCAGCGTCCACCTAAACAACCGACATGTTCTGTATGCCAGCGTACGTTCTCTACAAAGACGCTGCTGTACCGACACAGACAAACACACTTCGAACAGAAGACACATCAGTGTACGGTCTGTGAGAAGAGATTCTTCAGCGGCTACGCGCTGAGGTCGCATATGGCTCGGCATAGAGGGGAAAGGCCGTATATGTGCACTATATGCTCTAAATGTTTCTATAACCCCACTGATTTGAAGGTGCACTTCCGGTTACACACTGGTGAGAAACCTTTGAAATGTTCGGAATGTAACAAGACCTTCAGACGACATTCAACATTATGCCAGCACATGAAGAAGCATAAAGGAATAAGGAACCATGTATGCAACGTGTGTAATAAAGCATTTTACGAAGTTTCCAAATTGAATGCTCATATGAGAGTACACACAGGCGAGCGTCCCTACGAATGTCCGTACTGTTCGCGCAAGTTCGCGCAGCAGTCCGCGCTCATCTACCACCGGCGCACGCACACCGGCGAGAAGCCCTTCGCCTGCAAGGCCTGCCCTGCGCGCTTCACCACATCGTCTGCACGAAATAACCACCTCATTACGCACACTGGAAACAAAAAATTCGTGTGTCCAGTTTGCTTCAAAGGCTGCACGTCGCGCAATGAGTTACGCGTGCATTCTAGCAAGCACACCGGCGAGAAGCTGTTCGGGTGTTCGCTCTGCTCACTGCGCTTCAGCTCCGCCTCCTACCTGGCCGTGCACAGGCGCACGCACACCGGCGAGAAGAAGTACCAGTGCGACGTTTGTGGGAAAGGTTTCATAGAATGCAGTGCTTACAAAAAACACGTAAAAACGCACACGGCAGAGAAAAAAGAAAACGAAGCTACAGAATCACAAGAAACGTTTGAAACAGATCAGATCGAGGTTAAGATGTTGGAGAAAGTTGACGATAAGGTTGAAGAGGTTCAGGAGGTCACACAGGAGGGACAGAGTCAGAATCAGGAGAACGGTCAGAAGCGGTTTAAGTGCGGTCTCTGTGTTAAAAGTTATATGTACCTGCACAGCTTGAAGAAGCACATGTACAGTCACTTGCAGATGTGTGTGCTTGGGCCTGATGGCTCGGAGAGATTGTATGCTTTCAAGGGTCAGCAGTATCCAGTGATATCAACAGTACAGTCGCTGCAATTACAACAAACACACCAACAAATCAACACGCAACCACAACTGCAAGTCCAAACAATACAAATCCATCCGCAACACCAGCCGATACAAATACATGCGGTTGGTGTCCAACAAGTGCAACAAGTCCAACAGGAGCAGCTTCACGTCGCCACCTCTTCTTGCCAGACCATGTTACCTAATATATTACAGCTCCAACCAGGTGCAGTAGTATCAGGTTTAGGACAAGTAGGTCAGATGGGTCAGGATCTGAGCGGCGTGCACCGGATCATACTGCAACAACCTGCGCAGCACCCTGCGTTGTACACCATACACCATTAG
Protein Sequence: MAAATKKQSYNFEKICRACLQIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPTQLCLQCVHQISRCHAFKELVERNDVLLREQAKVMAEEALKENLLKEKDLNAVYRNIQFIEVPSLNSNQILEGFFTDTAEQSNITQEILKKEEFDIDKLTPEAVQEQKSDEGLNSDEENYLQMVVFQATSSVAPGRHVCNLCHKEFKTARWLKLHMRSHSNWIKANCKKPPKCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFSTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYMCTICSKCFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHKGIRNHVCNVCNKAFYEVSKLNAHMRVHTGERPYECPYCSRKFAQQSALIYHRRTHTGEKPFACKACPARFTTSSARNNHLITHTGNKKFVCPVCFKGCTSRNELRVHSSKHTGEKLFGCSLCSLRFSSASYLAVHRRTHTGEKKYQCDVCGKGFIECSAYKKHVKTHTAEKKENEATESQETFETDQIEVKMLEKVDDKVEEVQEVTQEGQSQNQENGQKRFKCGLCVKSYMYLHSLKKHMYSHLQMCVLGPDGSERLYAFKGQQYPVISTVQSLQLQQTHQQINTQPQLQVQTIQIHPQHQPIQIHAVGVQQVQQVQQEQLHVATSSCQTMLPNILQLQPGAVVSGLGQVGQMGQDLSGVHRIILQQPAQHPALYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01507418;
90% Identity: -
80% Identity: -