Basic Information

Insect: Limenitis camilla
Gene Symbol: -
Assembly: GCA_905147385.1
Location: LR990252.1:694907-699795[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2e-07 3.8e-05 24.6 0.4 1 23 169 191 169 191 0.98

2 14 0.013 1.2 10.5 1.9 3 23 199 220 197 220 0.94

3 14 0.00022 0.02 16.0 0.7 1 23 226 248 226 248 0.97

4 14 0.00026 0.023 15.8 3.3 1 23 254 276 254 276 0.98

5 14 2.3e-06 0.00021 22.3 3.0 1 23 282 304 282 304 0.98

6 14 6.8e-07 6.1e-05 23.9 1.1 1 23 310 333 310 333 0.95

7 14 3.2e-06 0.00029 21.8 4.1 1 23 339 361 339 361 0.98

8 14 1e-05 0.00089 20.3 0.9 1 23 367 389 367 389 0.99

9 14 0.00031 0.028 15.6 1.0 1 23 395 417 395 417 0.98

10 14 1.1e-07 9.4e-06 26.5 0.7 1 23 423 445 423 445 0.98

11 14 2.1e-06 0.00018 22.4 0.9 1 23 451 473 451 473 0.98

12 14 0.013 1.2 10.4 2.6 1 23 479 498 479 498 0.95

13 14 1.9e-06 0.00017 22.5 0.5 1 23 504 526 504 526 0.98

14 14 0.00021 0.018 16.1 6.0 1 23 532 554 532 554 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2e-07	3.8e-05	24.6	0.4	1	23	169	191	169	191	0.98
2	14	0.013	1.2	10.5	1.9	3	23	199	220	197	220	0.94
3	14	0.00022	0.02	16.0	0.7	1	23	226	248	226	248	0.97
4	14	0.00026	0.023	15.8	3.3	1	23	254	276	254	276	0.98
5	14	2.3e-06	0.00021	22.3	3.0	1	23	282	304	282	304	0.98
6	14	6.8e-07	6.1e-05	23.9	1.1	1	23	310	333	310	333	0.95
7	14	3.2e-06	0.00029	21.8	4.1	1	23	339	361	339	361	0.98
8	14	1e-05	0.00089	20.3	0.9	1	23	367	389	367	389	0.99
9	14	0.00031	0.028	15.6	1.0	1	23	395	417	395	417	0.98
10	14	1.1e-07	9.4e-06	26.5	0.7	1	23	423	445	423	445	0.98
11	14	2.1e-06	0.00018	22.4	0.9	1	23	451	473	451	473	0.98
12	14	0.013	1.2	10.4	2.6	1	23	479	498	479	498	0.95
13	14	1.9e-06	0.00017	22.5	0.5	1	23	504	526	504	526	0.98
14	14	0.00021	0.018	16.1	6.0	1	23	532	554	532	554	0.98

Sequence Information

Coding Sequence: ATGTCGGGGCTATTTAACATGAAAAGTATATGCCGGTGCTGCCACAAACAGGGCTCCTTCGCGAGTCTCAACGAGTCCTACATATATGACGGACAGCAACAGATATATAGCGATATGTTGCAACAAACGTTTAATATAAAAATAATAGAGCCAGCATCAAATTTATCTCATTCTATATGTGAGACATGTGTACCGAGGCTCTGCGATGCATTTATGTTCCGTCGACAGATCCTGTTGTGTGAACAGCTATTTTATCAGTATTGTAGTACACAGTTATCAGGAGTTGAATTTCCTACAGAGATAAAAAGTGAAGTAAAAGAAATTAATGAACCAAAGGAAGAAATAAATGAAGAGCAAAGCTCCTGTGATCGAAAATATGATGATGGTGCATTCAGTGATTCAGTAGATATAGATGATCAGCCTTTATCGATATTAAAAAATGAACAAAATGACTGGATATTATCTAATATAGATACAAAACAAAGGGATGCAAAAACAAAGAAATTCAGCTGCGATGTATGTGAAAAGAAATTCTCTTACAACGGTTCATTGGAAGTGCATATGCGCGTGCACAGCGGAGAGAAAACCCACTTATGTCGCATATGCAACAACAAATACAGTTTAAATAAAGATTTAATTAAGCATATTAATGTTAAGCATTCACTAAATGGAACTTTTCCTTGCACTTTTTGCAGTAAAATATTCGAGAAAGCTCGATTGTTGAAAAATCATTTGATTTCTCATTTTGGAGGGGAGAAGTTTAAGTGTATTCATTGTGAGAAGGAGTTTGTTAGGAAAAAGGGGTTGAAGGAGCATCTAAAAACTCATACGGGTGAGAAAAACTTCACTTGTAATATTTGTAATAAGTCCTTCGGTCATAATCAGACTTTGAAGTCTCATATTCTTACACACACGGGTGAGAAACCCTATGTTTGTGATGTATGTGGGAGGAGATTCCCTCAACGAACGCATCTGAAACGTCACATCTTTATCATACATACGGGAGTTAAGCCGTACATATGTAAAGTGTGTAACAAACACTTTTCAAGCAAAAGTTACTTGTCAATCCATCAACGACAACATACGGGTGAGAAACCCTATACTTGTGATGTGTGTAAAAAGGATTTCACTGCGTATACAACTTTGAAGGTCCACATGCGTGTACATACGGGTTTAAAACCGTATATATGTTCGTTTTGTGATCGCCAATTCGCGCAAATGGCTAGTTTTAAGCTGCACGAACGAACTCATACGGGAGAGCGTCCATTTTCGTGTAAAGTTTGTAAAAAAGCATTTTCTGATAACGGCTATTTACGAATCCATATGCGGGTACATACGGGCGAGAAACCCTTCAACTGTGAAGTTTGTAAACGCGCGTTTAGGGAGACTGGGCAGCTGAAACGTCACATGCGTATACACACGGGCGTGAAGCCGTATACTTGTAAGATATGCAATAAGCAGATAAGTAATTTATCGAAGCATATGCGAGTGCATACGGATGAGAGGCCGTTCAACTGTGGCATATGCAACAAGCAGTTTTCCATTAATGGTAACTTGAAGTTGCATATGCGTGTACACACGGGCGAGAGGCCGTTCAGCTGTGACGTGTGTAATAGTCACTTTAGTCAGAGTAGTGGTTTGAAACGGCATAGATGTACTCATGGGAAAGCTGATTAG
Protein Sequence: MSGLFNMKSICRCCHKQGSFASLNESYIYDGQQQIYSDMLQQTFNIKIIEPASNLSHSICETCVPRLCDAFMFRRQILLCEQLFYQYCSTQLSGVEFPTEIKSEVKEINEPKEEINEEQSSCDRKYDDGAFSDSVDIDDQPLSILKNEQNDWILSNIDTKQRDAKTKKFSCDVCEKKFSYNGSLEVHMRVHSGEKTHLCRICNNKYSLNKDLIKHINVKHSLNGTFPCTFCSKIFEKARLLKNHLISHFGGEKFKCIHCEKEFVRKKGLKEHLKTHTGEKNFTCNICNKSFGHNQTLKSHILTHTGEKPYVCDVCGRRFPQRTHLKRHIFIIHTGVKPYICKVCNKHFSSKSYLSIHQRQHTGEKPYTCDVCKKDFTAYTTLKVHMRVHTGLKPYICSFCDRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLRIHMRVHTGEKPFNCEVCKRAFRETGQLKRHMRIHTGVKPYTCKICNKQISNLSKHMRVHTDERPFNCGICNKQFSINGNLKLHMRVHTGERPFSCDVCNSHFSQSSGLKRHRCTHGKAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -