Lcam015773.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990253.1:5938274-5943732[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.013 1.2 10.5 1.2 2 23 37 58 36 58 0.96 2 32 0.1 9.3 7.6 2.2 5 23 96 115 83 115 0.93 3 32 0.021 1.9 9.8 1.1 2 23 121 143 120 143 0.92 4 32 1.4 1.3e+02 4.1 1.1 2 23 181 202 180 202 0.94 5 32 0.063 5.6 8.3 0.1 2 23 230 252 229 252 0.96 6 32 0.16 14 7.1 0.1 2 23 273 295 272 295 0.94 7 32 0.0011 0.095 13.9 0.3 1 23 300 323 300 323 0.95 8 32 9.3e-05 0.0083 17.2 2.6 1 23 327 350 327 350 0.96 9 32 5.9 5.2e+02 2.1 0.3 2 19 381 398 380 401 0.90 10 32 0.0003 0.027 15.6 1.7 1 23 450 473 450 473 0.93 11 32 0.0026 0.23 12.7 0.1 2 23 501 523 500 523 0.95 12 32 6.6e-05 0.0059 17.7 0.3 1 23 545 568 545 568 0.93 13 32 4.1e-05 0.0037 18.3 2.8 3 23 575 595 574 596 0.94 14 32 0.00015 0.013 16.6 1.6 1 23 602 625 602 625 0.95 15 32 0.0001 0.0092 17.1 0.6 1 23 630 653 630 653 0.96 16 32 0.17 16 6.9 5.5 1 23 657 680 657 680 0.96 17 32 0.019 1.7 10.0 0.6 3 23 688 708 687 708 0.97 18 32 1.5 1.4e+02 3.9 1.1 1 10 714 723 714 727 0.95 19 32 0.01 0.9 10.8 3.1 1 23 765 787 765 787 0.98 20 32 2.8 2.5e+02 3.1 0.0 2 23 815 837 814 837 0.94 21 32 8.2e-05 0.0073 17.4 0.4 1 23 885 908 885 908 0.97 22 32 0.026 2.4 9.5 0.4 3 23 936 957 935 957 0.96 23 32 0.054 4.8 8.5 0.4 3 21 962 980 961 981 0.96 24 32 0.021 1.9 9.8 0.3 1 21 1026 1046 1026 1049 0.90 25 32 8.6 7.6e+02 1.6 0.0 3 23 1078 1099 1076 1099 0.93 26 32 0.00032 0.028 15.5 0.1 2 23 1122 1144 1121 1144 0.96 27 32 3.3e-05 0.0029 18.7 0.4 3 23 1151 1172 1150 1172 0.93 28 32 0.034 3 9.2 2.7 2 23 1177 1199 1176 1199 0.93 29 32 0.0027 0.24 12.6 4.0 1 23 1204 1227 1204 1227 0.97 30 32 2.4e-05 0.0021 19.1 5.0 1 23 1231 1254 1231 1254 0.97 31 32 0.00029 0.026 15.7 0.2 2 23 1261 1282 1260 1282 0.96 32 32 2.3e-05 0.002 19.1 1.0 1 23 1288 1310 1288 1310 0.98
Sequence Information
- Coding Sequence
- ATGCAATCGGACGAATGCTCTACTGGACTTACGGCGATGCAGCGTAAAAACCTCCAAATTTTATTTACTCACTCTAGTGTTGTACCGTTTGAATGCCGTAACGGCCTTTCTTGCTTCATTTGCAACAAAAATATTTCAATGTATGAGGATCTCAAAAAACACACGAAATCTCATGATAGCTCTATATTAAAAAAAGTTTTAAAGGAAGTCAATCCTAAAATAGTCAAAGTAGATGTTTCTGAAACTAATTGTGAAACGTGTGATATAGCTTTTGATCTCAATAATCTCTGTGGTTTAACGTTCAGAGGACATCCAAATTACCGAGCTCACATGTCCCGATATCATAGAACCAACGCGTGCAAATGTCCAGATTGTAACATGGAATTTTGGAATTTGGAAAAGCTAACTCGTCACAGAGCTAATATTCATGATGAAATTGGACCGTCAAAGATGCTCAGTCCTAATTCATTGAGGCGCCGAAATCTTGTGATATTATTTAACAACACATCAATCATACCCTTTAAATGTCGAGGTAAATGTAGATGCTTTTACTGCGGAGATGAATTGCCGGAATACGAAGATTTGCGTAAACACACTAAAGCTCACGGTCCGTGCACTGATAACGATCGGGCAATTAAATTAGTTAAAACCGATGATGCAGAAGTGAAAATCGATATATCGAATATAACTTGTGAAATCTGCTATGAGTCTTTTGCAAAATTTGAGGATATTGAAATGCATTTGATAACAAAACATAAACTTCCATACGATCGAAATGTCAAATTAATAATTTCGACCTATCGTCTTGCTGACTTGCAGTGCCTTTTGTGCGATCAAATATTTTATCTAGTAAGCGATTTAGTAACACATGTGAATAATTCACATCTTACGCAAAGTTTTGATTGCGAAATCTGCCAACAGAAATTTATTAGAAAACCGTATTTAGATGCACATGTAAGGCTTAGACATAAGGATAATTACAAATGTCTTAAATGTCCTCAAACATTCTCGTCGCACTCTGAACTCCAAGAACATAGAACCAAAGCTCACATTGCCGTCTGTAATATTTGTTTTATGAAATTTCCTTGTCAAAAGAAAAGATTGAAACATATGAAATCGGAACACGTTGATGAAGAATTAAAATGTGGATTCTGTCGAAAAACGATGAGCACCAAATTAGGTTTCTTACGACACGCTGCTAAATGTGCGGAACATGGAATTATTGGAAACGATTCTTTTGTAATAGATGATGACGAGAAGAAACCAGCTGTTATCCAAATAAGAAATAATATAGCTTGCATTCTTAACATGTCGACAGCTATACCATTTAAGTGTTTTATGAGCAGATTTAGGTGTTTCTATTGTCCTAAAGATTTTACTGACTGCGACGAACTTAAAGAGCATACTGTAATTGAACATCCCGTATGTGATATTAATTTTAAATGTATGAGATTGCGTAACAGACAAGAAGGCTGTGTTAAAGTAGACATATCCACACTTTCATGTAAAATGTGTTACGAAAGTTTTGCAGATTTAGATTATCTAATTGATCACTTAATATCTGAACACAAAGCACAATATGATAAATCCATTGATTGCAATATACAAGCGTACAAATTAATCAAAGACAACTATCCATGTCCTATATGTGAAGTAGTTTTCACGCATTTCAGCACTTTGTTAAAACACATGGGACAAGTTCATACTGATAATAAAAATATTTGCATGCATTGTGGCAAGTCGTTTAGAAATTTGCCAAACCTTAGAGTGCACATTTCTAACCACCATAAAAAAACGGGAAGTTACAAATGTGATAGATGTGATCAAGAATTTTCCTCTAATAAGTATTTGCAGACACATTTAGGCCGCAGCCACGCTCTGAAAGTTTTTGAATGTCCCGTTTGTCTGGAAAAGTTTACATCTAACTATACTATGCAGAGGCACATGATTAATATGCATAGTTCGGGACACAAATGTCTATATTGCGGTAAACTTTTTACATCTAACTGTTTCATGGTCGATCACGTGAAGCGAACACATTTGAAAGAGAAAAATGTCGCTTGTACAATTTGCTACGAAAAATTCTTTGATGCTCAACGCTTAAAAACTCATATGGTGAAGCATAATGGTGAAAGAAACTTTCATTGTGACGTTTGCGGGAAGAAATTTCTGTGGAAGAAAAATCTTAGAGATGAAGAGCAGTACGACCTCTGCACCTCTGAACGCAGACGAAAAAACTTGCAAACTCTATTCAACAACACATCAATAATACCCTTTAAATGGATGGGAAGGTACATCTGTTTTTATTGCGACAAATATTATGACGAATATCAAACTTTAAGAAAGCATACTAAGTCCCATGGTATGTGTAATACTACTGATTACCCCTTGAAAACTATTAAAGGAAGTAATATCGAAATAAAAGTCGATGTGTCTGAAATAACGTGCGAAGTTTGCGAAGAGCCGCTAACAAGTTTTGATGAGATTGTCGATCATCTAATAAGAAAACATGAGTTAGAATACGATAGGAGTATTGAGATTCCAATTCAGGAATACCAACTGGCGGATTGTTGCTGTAGAATATGCGGGCAAAAGTTCACTTGCTTTGGATACTTAATCACTCACACAAATATAACTCATCCCCCAATCTGTTTTATGTGCGATAACTGTGGAGAAACGTTTAATATAAAAAAAGACTTAGCCATACACTTAAGGCGTTACCATCAAGATGAAGAAGAATTCCCTGAAATTTGCGAAACGCAAGGCCTTCAAATTAAACATAGAAATAATAGTCACTTCAAAATATGTAAAATATGCGATGCACGCTTTCTATCTTTAACGCTTCTCAAAAGGCATGTAAAAAGCGATCATTTTGATAATCTTTGCCCTTACTGTTCAAAGAACTGTCAATCTTCTCAGGGCTTGAAGGACCATATTATGGAATGTACTAAGAAAAGATTTGTTTCTGAAGATAAACTCAAGATACATAAAAAGAAAGATATAAATCAAGTTAGGAAAAATATTCAATGTGTTTTAAACATGTCTACTGCGGTACCGTTTAAATTTTTCACAAAATATTCCTGCTTTTATTGTTCGAAAAGTTACGTCGAATTTGAAGAACTTAAGGAGCATGTTGTCGCTGCACATCCTGTGTGTGATTTAAATGAGAAATATATGAAAAATTGTAAAGGAGAAAGAATAACTGTTAAAATTGACATATCCTCGTTAGCATGTAAAGTTTGCTTCGTACCACTTGAAAGTGTTGATTTGTTAATCGAGCATTTGATATCCAAACATAGGGCTGAATACGACAAATCGACAACTGGATGTTTCGAACCATTTAAAATAATAAAAGATTGTATTCCGTGTCCAAATTGTTCGACAGTTTTTAGATATTTCGGTTCACTTTTAAGGCATATCAACTCAGAACATAGTAACAATAATAGAATATGTGATTTTTGCGGTCGTAGTTTTAAAAATGTATCTAATTTAAAGGTTCATTTAACTTATGCGCATACTGGTGCTTGCGAGTGCGACATTTGTGGGGCTAAATATAGAAATCAATGGTGTTTAGGTCGCCATAAGGCTAAATCTCATAATGCGAAAGATTTCCAGTGCACGAAATGTCCGGAACGTTTCCAATCTCAGTATCATAAGCAGAAGCATTTGATAAAAGTCCACGATATTGGGCACAAATGTTCGTATTGTGGGAAAATGTTTACGCGGAACTCGTTTATGAAGGATCACGTTCGCAGGACTCATTTGAAGGAGAAGAACGTTCCTTGTACTGTTTGCGATGAAAAGTTTTTCGACAATTACTTGTTGAAGTTGCATATGGTTAAGCATAAAGGTGAAAGGAAGTTTACTTGTGAGGTTTGTAATAAAACGTTTCTGAGACGTTCGAACTTGAACGCTCATACGGAAATGCATAAAAAGTATGGACATCTCTAG
- Protein Sequence
- MQSDECSTGLTAMQRKNLQILFTHSSVVPFECRNGLSCFICNKNISMYEDLKKHTKSHDSSILKKVLKEVNPKIVKVDVSETNCETCDIAFDLNNLCGLTFRGHPNYRAHMSRYHRTNACKCPDCNMEFWNLEKLTRHRANIHDEIGPSKMLSPNSLRRRNLVILFNNTSIIPFKCRGKCRCFYCGDELPEYEDLRKHTKAHGPCTDNDRAIKLVKTDDAEVKIDISNITCEICYESFAKFEDIEMHLITKHKLPYDRNVKLIISTYRLADLQCLLCDQIFYLVSDLVTHVNNSHLTQSFDCEICQQKFIRKPYLDAHVRLRHKDNYKCLKCPQTFSSHSELQEHRTKAHIAVCNICFMKFPCQKKRLKHMKSEHVDEELKCGFCRKTMSTKLGFLRHAAKCAEHGIIGNDSFVIDDDEKKPAVIQIRNNIACILNMSTAIPFKCFMSRFRCFYCPKDFTDCDELKEHTVIEHPVCDINFKCMRLRNRQEGCVKVDISTLSCKMCYESFADLDYLIDHLISEHKAQYDKSIDCNIQAYKLIKDNYPCPICEVVFTHFSTLLKHMGQVHTDNKNICMHCGKSFRNLPNLRVHISNHHKKTGSYKCDRCDQEFSSNKYLQTHLGRSHALKVFECPVCLEKFTSNYTMQRHMINMHSSGHKCLYCGKLFTSNCFMVDHVKRTHLKEKNVACTICYEKFFDAQRLKTHMVKHNGERNFHCDVCGKKFLWKKNLRDEEQYDLCTSERRRKNLQTLFNNTSIIPFKWMGRYICFYCDKYYDEYQTLRKHTKSHGMCNTTDYPLKTIKGSNIEIKVDVSEITCEVCEEPLTSFDEIVDHLIRKHELEYDRSIEIPIQEYQLADCCCRICGQKFTCFGYLITHTNITHPPICFMCDNCGETFNIKKDLAIHLRRYHQDEEEFPEICETQGLQIKHRNNSHFKICKICDARFLSLTLLKRHVKSDHFDNLCPYCSKNCQSSQGLKDHIMECTKKRFVSEDKLKIHKKKDINQVRKNIQCVLNMSTAVPFKFFTKYSCFYCSKSYVEFEELKEHVVAAHPVCDLNEKYMKNCKGERITVKIDISSLACKVCFVPLESVDLLIEHLISKHRAEYDKSTTGCFEPFKIIKDCIPCPNCSTVFRYFGSLLRHINSEHSNNNRICDFCGRSFKNVSNLKVHLTYAHTGACECDICGAKYRNQWCLGRHKAKSHNAKDFQCTKCPERFQSQYHKQKHLIKVHDIGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNVPCTVCDEKFFDNYLLKLHMVKHKGERKFTCEVCNKTFLRRSNLNAHTEMHKKYGHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -