Lcam004882.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990236.1:10013297-10028185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.9e-05 0.0071 17.4 2.2 1 23 418 440 418 440 0.97 2 20 0.012 1 10.6 1.3 1 20 446 465 446 468 0.93 3 20 2.2e-05 0.0019 19.2 5.4 1 23 486 508 486 508 0.98 4 20 0.00019 0.017 16.3 4.7 1 23 514 536 514 536 0.99 5 20 3.5e-05 0.0031 18.6 5.3 1 23 542 564 542 564 0.97 6 20 1.1e-05 0.001 20.1 7.3 1 23 570 592 570 592 0.97 7 20 7.4e-07 6.6e-05 23.8 2.9 1 23 598 620 598 620 0.97 8 20 0.0001 0.009 17.1 6.7 1 23 626 648 626 648 0.97 9 20 0.00023 0.02 16.0 5.6 1 23 654 676 654 676 0.97 10 20 4.8e-07 4.3e-05 24.4 1.9 1 23 682 704 682 704 0.98 11 20 4.9e-05 0.0044 18.1 7.9 1 23 710 732 710 732 0.98 12 20 8.2e-06 0.00073 20.5 6.4 1 23 738 760 738 760 0.98 13 20 4.3e-05 0.0038 18.3 4.5 1 23 766 788 766 788 0.98 14 20 2.1e-05 0.0019 19.3 6.9 1 23 794 816 794 816 0.97 15 20 1.5e-05 0.0013 19.7 7.0 1 23 822 844 822 844 0.97 16 20 3e-06 0.00027 21.9 5.9 1 23 850 872 850 872 0.98 17 20 3e-05 0.0026 18.8 7.8 1 23 878 900 878 900 0.97 18 20 9.6e-07 8.6e-05 23.5 3.9 1 23 906 928 906 928 0.97 19 20 0.00054 0.048 14.8 0.3 1 23 935 957 935 957 0.96 20 20 0.005 0.45 11.8 7.4 1 23 967 989 967 989 0.99
Sequence Information
- Coding Sequence
- ATGAATCCTGAACACCACAGTATGAATACGGGTGGTGGCCAGCCACCAGGCAACTCGGAGTCTCAGAGCCAAAGAGTTCAATCGACTCAACAACAGCAGGGACAGGCGAATAATCTTACACCTACAACATCTGCTACTGATTTGAGAGTTAACTCGGCGGCTGTAAACGTTGCTTTGTCGAGCGTGGCTAAATATTGGGTGTTTACTAATTTATTTCCCGGTCCGTTGCCCCAAGTTTCCGTGTATGGGTTGCCGACTGGTACAAGGATTGAAAATGGGAAACCAGTTCAGGACATTGGCCAAGCTCATGCAAGCATTTTAAATGGTGATCCCAATATAATATTGGGCCATCCTGGACAACCACAAGTAACAGTATCTGCGGCAGGTCAACAAATACCTGTATCACAAATAATTGCAAATCAAGCAACCCAAGGGCATGATTCTCTGGTGGGGCATAACCAACAAGAAGCAGCTGGTACTAGCAGTCAGCTGGCGGCTCAAACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAATATTGATATGGTAAATCATGTGGGTCATCACTCACAGCAACACTTAATGCAACAACAGCTTATGGCGGCAACACGTCAGGAGCATGCGAATCAACAGATCCAACTGACTGTGAGCGAAGATGGAATTGTCACAGTAGTGGAACCAGGTGGTAAATTGGTGGATAAAGAAGAACTCCATGAAACCATTAAGATGCCCACAGACCACACACTTACTGTTCACCAGTTGCAACAAATTGTTGGACATCATCAGGTGATAGACAGTGTAGTACGTATAGAACAGGCCACAGGAGAACCAGCCAACATTCTGGTGACACAAAATGCAGATGGAACAACCTCTATAGAGACCAGCGCGACAGATCCTCTCATAGTAAAGGATGAAAAAAATGTTGGCAAGATTGAATCTGCACAGTTTGCTATACCTGCAGATATCAAGGAGCTTAAGGGGCTTGATTTGAAAAGTGTGGGAGCAATGGGCATGGAGGGAGCACTTGTGAAGATATCCACTGGTACAGAACATGATCTTCAACACGCCATGTATAAAGTGAATGTTGAGGATCTCTCACAACTATTGGCTTATCATGAAGTGTTCGGGAAACTGAATACTACTGAAGGCCAGCCACAGGCTAAGGTGATCAATGATGTGGATGTAGAAGTGGCAGGAACAAGCACAGCCATGACGGAGTCCGAGTCGTCCCCCGGACACCACTCTTGTGATATCTGTGGGAAGATATTCCAATTTAGATACCAACTTATTGTACATAGACGGTATCATGGAGAAAGCAAGCCGTTCACATGTCAAGTTTGTGGCTCTGCCTTCTCAAATCCTTTGGAATTATCAAAACATGGAAAGTGTCATCTAGCTGGTGATGGCGAACGCCAACAGAAGAGGCTACCTCAAGAAAAACCCTATGCTTGCTCCACTTGCCATAAGACATTCTCAAGGAAGGAGCATCTCGACAATCATGTTCGAAGTCACACTGGAGAAACTCCATACAGATGCCAGTTCTGCGCAAAGACGTTCACGCGTAAAGAGCACATGGTGAACCACGTACGCAAACACACAGGCGAGACTCCGCACCGCTGCGAGATATGCAAGAAGAGCTTCACGCGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACTGGTGAAACACCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCCCATACAAATGACACCCCCTTCAGATGCGATCTATGCGGCAAGTCCTTCACAAGGAAGGAACACTTCACCAATCACATTTTGTGGCACACGGGTGAAACTCCACATCGCTGTGATTTCTGCTCAAAAACATTTACGCGAAAAGAACATCTATTGAACCATGTGCGTCAACACACCGGGGAATCCCCTCACCGGTGTAACTTCTGCGCGAAGTCCTTTACTCGTCGAGAGCATCTTGTTAACCATGTGCGGCAACATACAGGAGAAACACCCTTCCAGTGCGGGTACTGTCCTAAGGCTTTCACACGGAAGGATCATCTTGTAAACCATGTCCGCCAGCACACAGGAGAATCTCCACACAAATGCTCCTTCTGCACGAAGTCTTTCACGCGCAAGGAACATTTAACAAATCACGTGCGACAACACACCGGGGAGTCCCCGCATCGATGTTCATACTGTGCCAAGTCGTTTACGAGAAAAGAACATCTCACTAACCATATTAGACAGCACACCGGGGAGACTCCCCACAAGTGCACGTACTGCCCGCGAGCATTCTCGCGCAAGGTGCACCTCGATCAGCACGTGCGGCAGCATACTGGGGACATGCCGCATACTTGTTCCTATTGCAAAAAGAGCTTTACCAGAAAGGAGCATCTAGTTACGCACGTTCGACAACACACAGGAGAAACACCATACAAGTGCACATATTGCTCGAAATCGTTTTCGCGGAAGGAGCACCTCACCAACCATGTGCACCTCCACACCGGCGAGACTCCGCACAAGTGTCCCTTCTGTACCAAGACATTCTCCAGGAAGGAGCATCTAAACAATCACGTGAGGATACATACAGGCGAATCACCACACAGATGTGAGTTCTGCAACAAGACGTTCACACGCAAAGAGCATCTTACCAATCATTTGAAGCAGCATACGGGTGACACGCCGCACTCTTGTAAAGTCTGCTCGAAACCCTTCACCAGGAAAGAGCATCTTATTGCGCATATGCGCTCACACAGTTGCGGTGATCGGCCGTACAGTTGCGGGGAGTGCGGCAAATCGTTCCCGCTCAAAGGAAATCTTCTCTTCCACGAGAGGTCGCATAATAAAGGCAACAATGCCAACAAGTCCTTCCGCTGTGATATCTGCTCTAAGGAGTTTATGTGCAAAAGTCATCTTACGACACATAGAAGAACACATGCGGAGGGAAATGATAGTATAACTAAACCTGAGCCAGCTACTGAGAACGAAGATTGCGGCGATTGCAATAATAAAGAATCGCCGGAGAGGATCGAGAGAAAACATGATATTACTCTGGATTTCAATAAACACGATTCCGGTTTGGATACAAGATCAACATTAGATAGCAAGCCTATTATTGAAACAAATGCTTTGCAAAATCAAGCATCAAATGCAACTGTAATGCAAATCACTGGCCAGGTCCGAACAGGCGCAGCAACAAGCTCCGCAAGTGTCGTTGCGGGCACATTCACCCACACAAGCACCCAGCACCACGCCGCTAGCGGCATAGCACACCACCCCGTGACCGTGAACTACTAG
- Protein Sequence
- MNPEHHSMNTGGGQPPGNSESQSQRVQSTQQQQGQANNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGTRIENGKPVQDIGQAHASILNGDPNIILGHPGQPQVTVSAAGQQIPVSQIIANQATQGHDSLVGHNQQEAAGTSSQLAAQTQQVPNNRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMAATRQEHANQQIQLTVSEDGIVTVVEPGGKLVDKEELHETIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNADGTTSIETSATDPLIVKDEKNVGKIESAQFAIPADIKELKGLDLKSVGAMGMEGALVKISTGTEHDLQHAMYKVNVEDLSQLLAYHEVFGKLNTTEGQPQAKVINDVDVEVAGTSTAMTESESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFSNPLELSKHGKCHLAGDGERQQKRLPQEKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKVHLDQHVRQHTGDMPHTCSYCKKSFTRKEHLVTHVRQHTGETPYKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLNNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLKQHTGDTPHSCKVCSKPFTRKEHLIAHMRSHSCGDRPYSCGECGKSFPLKGNLLFHERSHNKGNNANKSFRCDICSKEFMCKSHLTTHRRTHAEGNDSITKPEPATENEDCGDCNNKESPERIERKHDITLDFNKHDSGLDTRSTLDSKPIIETNALQNQASNATVMQITGQVRTGAATSSASVVAGTFTHTSTQHHAASGIAHHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00247403;
- 90% Identity
- -
- 80% Identity
- -