Lcam006342.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- clz9
- Assembly
- GCA_905147385.1
- Location
- LR990224.1:19051758-19054132[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 6.7e-05 23.2 0.0 1 38 16 53 16 59 0.92
Sequence Information
- Coding Sequence
- ATGCCTCGTAACTATATCAGGAAATCTTTACGGGCAACTTGTTATACTCCTGAGGACTTGGCGATTGCAATACACAGAGTGGAAAATAAAGAATTAACCATGTACGCAGCATCTAAGTTATATAACATACCTGACGCTACGCTGCACAATCGTTTACATAAAAAATCTGGAATAAAAAGCAGTACTCTAGGGCATCCAACGGTTTTGCCCCTCGAAATAGAAACACAATTGGCGAACGGACTTGCAGTATTAGAAAAATGGGGATTTGGTTTGTCAAGAAAGGAAGTGTTTTCACTTGTAAGGGAATACATTAATTTGAATGAGATATCAACACCATTTAATAGTGGCGTCCCAGGACCAGATTGGTTTACAAACTTTAGAAAACGACATAGATTATCATTGAAAAAGGCTCAACCTATTGAGCATGTCAGACGAAAGAATACAGATCCCTTCATCGTGGGTGAATATTTTAGCCTGTTGAAGTCTACTCTAAAGACATTAGGTCTAGAAGAAAGGCCAGAACTAATCTGGAACCTTAATGAGACTTCAGTTAGTTTGGATCCTTCTAAAACCAAAGTAGTTGGGCGAAAGGGTGCGCCTTGCTCTCGAACAACTCACGGTACAGGCAAAGAACATATAACAGTTCTAACAGCAGTAAGTGCCGGCGGACAGAAACTGACTCCTTTAATCATATTTAAAGGTAAATATGTATGGGACACCTGGATGGCTGACACACAAAATTTTAAGTTATCTTACGCAGCTAGTAAAAGAGGATGGATGGAGACGGAAATATTCCACAATTACATGGAAAAAGTGTTCATTCCGGGACTCGGCGAAGAAAGGCCCATTCTGGTAGTCTACGACGGTCATAGCACTCATGTTGATATAAAAGTTGTTGAGTTGGCACGAAAACATAATGTTACGATATTAAAATTACCCCCACATACGTCTCATCTTTTACAGCCACTGGATGTGGCTGTATTTAAATCTTTTAAATCTAGCTGGGACGCCAAGTTAGTTGAATGGCAGCGACATAACGTTGGTGTAAAGCTACCTAAAAGAATGTTTTCGAACTTGTTTGCAGAAATATGGAATAATACAAAATCTGAAAGTATTATCAACGGCTTTATAAAAACAGGAATATGTCCTTTTAATTCAGATGTAATTTCAGTCGATAAATATGATCCAAGAGCTTACAAGCGCTGGACAGACAAGCATAAAATGGAAAAAATATTTCAGACTCGACAACCTGTTCTGCAATCAGATGGTAACACTCCCGTGTCGTTACTTGAACTTAGCATTAATGTAATTAATAGATTGGTATGTGACTATGGTACAATTTGCGACATTGAAGGTTTCCAGTCTTCATTTTTGATTCCTGAAAAAGTCCACTTACTGGCAGATTTGACAAAGTATGAAGAGCAGGCGTCATCATTTGTGGCAAAGAACCAAAATGATATCCCGTTTTGCCTATCTAATATTCAGACAAAACCCGTAACTAGTGCGGAGTCTAAAATTAAGATCATTTCTAATGAAGTAGTTAACTGGCCTTATAGTTTTGAAGATCTGTTACTGCAAAAGTACAAAAAGAAAACCAAATTAACTTTATGTACCGACACAGAAAGTTCCACTAGCGAAATAGAGTTTAAGGCTGTAGATACCGATTCTGAATACGAAAATATGGAAGACTACATTGAGCAATGCCTGAAAATGCAAGAAGACGAAGAAAACATTGAACCAGACGCAAAATTGACTTTTGGCTTAAGCGAAATAAAATTTTATGAGGATAGTTCTTTACAGTTAAACAGAAGATTGGCTTGTAGTTCAGTTCACAACGAAAAAAAGTGTCAAACATTTCATAGCTATCCTACTGTAGAAGATATCTGGGTTATTAAATCTAACGCAGATATAATTTGTGTTTTACCTAAGCCCGTTATTTCTCGACGTGGCCAACTAATATTTAACGTTGATCTCAATAAATATAATATCCAGTAA
- Protein Sequence
- MPRNYIRKSLRATCYTPEDLAIAIHRVENKELTMYAASKLYNIPDATLHNRLHKKSGIKSSTLGHPTVLPLEIETQLANGLAVLEKWGFGLSRKEVFSLVREYINLNEISTPFNSGVPGPDWFTNFRKRHRLSLKKAQPIEHVRRKNTDPFIVGEYFSLLKSTLKTLGLEERPELIWNLNETSVSLDPSKTKVVGRKGAPCSRTTHGTGKEHITVLTAVSAGGQKLTPLIIFKGKYVWDTWMADTQNFKLSYAASKRGWMETEIFHNYMEKVFIPGLGEERPILVVYDGHSTHVDIKVVELARKHNVTILKLPPHTSHLLQPLDVAVFKSFKSSWDAKLVEWQRHNVGVKLPKRMFSNLFAEIWNNTKSESIINGFIKTGICPFNSDVISVDKYDPRAYKRWTDKHKMEKIFQTRQPVLQSDGNTPVSLLELSINVINRLVCDYGTICDIEGFQSSFLIPEKVHLLADLTKYEEQASSFVAKNQNDIPFCLSNIQTKPVTSAESKIKIISNEVVNWPYSFEDLLLQKYKKKTKLTLCTDTESSTSEIEFKAVDTDSEYENMEDYIEQCLKMQEDEENIEPDAKLTFGLSEIKFYEDSSLQLNRRLACSSVHNEKKCQTFHSYPTVEDIWVIKSNADIICVLPKPVISRRGQLIFNVDLNKYNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00896743;
- 90% Identity
- iTF_00896743;
- 80% Identity
- -