Ladu023213.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010001166.1:27674-53571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1 81 4.4 2.0 3 19 197 213 195 215 0.92 2 11 8.5 6.1e+02 1.6 0.1 1 10 231 240 231 258 0.78 3 11 0.36 26 5.9 5.1 1 23 266 288 266 288 0.99 4 11 0.018 1.3 10.0 4.0 2 23 802 823 801 823 0.95 5 11 3.4 2.4e+02 2.9 1.8 1 23 873 894 873 894 0.78 6 11 0.00088 0.062 14.2 1.3 2 23 942 963 941 963 0.95 7 11 0.0086 0.61 11.0 0.8 2 23 981 1003 980 1003 0.97 8 11 4.7e-07 3.4e-05 24.5 1.8 1 23 1009 1031 1009 1031 0.98 9 11 7.8e-05 0.0055 17.5 0.4 2 23 1037 1058 1036 1058 0.95 10 11 7.3e-05 0.0052 17.6 3.2 2 23 1065 1087 1064 1087 0.96 11 11 1.3 89 4.2 0.1 3 12 1126 1135 1125 1138 0.86
Sequence Information
- Coding Sequence
- ATGCCCATGACCCCGCCCGTCCAGCTCTCAGGTTTACAAATATCCGTGGAGGTGGAGGAATTCGACGAGTCCGTCATGAGCAATGTTGGACCTGAACACCCATCCTACCCTCGAAACCCAAAAAAAACACGACAATTTAAATCATTTCGTATAGACATAGAAAACATTTATAAAGTCGCAGACCACATCGCGATGCTCACCAGCAATTACGCAGACAAATTCCTCAGCATCGAAGTCAAGAATATGTGGGGACGTGCGTTACTGGAGAAACATGAACTGGATAAGTACGATGAGAAGATTCAGAACGCTTTGAACGAATGGTCTCAGAAAACCCAGACCAGCAGTCCTCTCTTCTACCAATGTCACATCTGCCGCCTCGCTTGGTGGTACTTAAATCCTTTTGCTGAGCATGTCCGAAAGCACAAGATTGAAGAGTTGAAGATTTACTACATAGATGGTGTGGATTCGTTTATAGTTGCCAGTCGTATTTATATGTTTGCCCCTGTCTATATTCCTTGCGGGGGGGAATGTTTCCGCTGTGGCAGCCCGTTCAGTTTCCACGTCAGACAAGATGGTGAATATTTTGGCTGTTCTGGATGTTCACAGACTTTTAAGACTTGTGACAAGGCAGTTCGGCATAAGACTGAGTGTACGGATAAGGCGGAGTTTCATGATCAAAAAGTTTTGAAGTTTCAATGCAAGGTGTGCTCGCGTTTATTTCTGTCCGAGGCGAGTGTGGATTATCACTTGGTTCTGGCACATCAGGAGATGCATATGAAATTGTCAGAGAGTAACTATCGTTGCAAGGTGTGTCATATGACGCTGGAGAAGCGCTGCATGGCAACCCAGCACATGCTGACTCATACTAACATGTTCCGAGTAGTGTATAAGTGCGTCAACAGAAGGTGTCCTCCGACCCGACTGTTCTGCGATGAATACTCTGCCAAAATTCACCTGTTAAGGTTTCACAAGAAAAAGTATGACAGAAGGAGGAATTCTTTCGAGGAGGTATTAGTTCCTGAACTGTGTGTCACAGAAATAGAAACATATCCTATGGAGACACTTGGCGCTAGTAAAGATACCACAGAAGTAACCGACGTGAATAACCCTGCTGAAAGTGACGGTAACTACCAAAAGCAAAGTGACGGTAACAACCAAAAGCAAAGTGACGGTAACAACCAAAAGCAAAGTGACGGTAACAACCAAAAGCAAAGTGACGGTAACAACCAAAAGCAAAGTGACGGTAACAACCAAGAGTTTGAAACGGAGGTTGATTGGTGCGTTAGTGATTATCAAACGGAAAGGCAGACAACGAAACAAGAAAATATTGTTATAAAGCAGGAGTTGTCAGACAGCGACACTGAAGCCATGGACTACGCAGAAATGCTCTCGAAAGTGTTCAAAGTATCCAACAGTGATAGGAAGAAACCTCGCTCCCATACGAAACCACAAGAATTACTAAAGCGCCATAAAACACCCCAAAACGTTCGAACCCTAGAACCTAAAACCTACCAAATCAAAAACCGCCTAAAACAACAACCGACAAAACCCCAAAATAACATATCCCCTGCACCCCAAAATATTGTTCCCGTTGTACCCCAAATTGTCCAAACTTTACAACCTCAAAATGACCAACCTATCCAACTTCAAATTGTACAACCGCAAATAAACACAACCCATAACACAGAATCCCAAAAGTCTCTGGACATCCAAATAACTTCAATAAAAAGTGAACCCATCGATATCGATTACGACAATTTTATCGACATTCAGGAAGACCCTATAACCATCAAACAGGAACCCGTCGAAGCATGCTTTGGCACCTTTTATCAAGAGAAATTTCAAGATGACAGCTTTCATACTGACAACTCCGAAGAAAACGAATGTCAAATTAACATCCGTCAGCTTGACAGCGGCCAAAATAGTTCCAGTGACACGGGCACGATGTTTGGCGATATGCAGATCAAGTCCGAAATGCTATCCGACGACGATAACGAAATGCTCGTAATTGACAGTGACAGCGACAGTGACACTTCGAAACTGCTCGCCGTCAAAATGGAGCCAGAGGAAGTAAGGAAAGAACTACTAGAATGCAGCGAAGTAAACGACATTAAAGATTTACCGGACACTTACGACGAAAAAGCAATATTCAAAACACCACACGACGAACGCGTACACGCCAAAATAATAAAAGAAAAACAAATAAAAGAACGCAAAGTGACAGAGGCTGTCAAACCGAAAAACAAAAAAGGAAAACAATTGACGTACGACCAGTACGGGAATAAAATCGAGAAGTTGTACACTTGCGCTCAATGTGGCTTTGTCGGTAGCCACAAACTATACAAGATCCACAAGAAGTCCGAGTGCGAGCTGCCAACGAAGTCAAAAGTCAGTGTCAACGTGACGTGTACCAAATGCAACAAGACATTTACACACATGAACAAGTATATTGTGCATTTTGAGAAGCACGGTTATGATGTGTTACATTGCCCGTGCTGTAATGTTGAAATGGAAACTGTCAAAGAGTTGTTGACGCATTTTTTTAGACATGTTAGAGTGAATTACGTCAACTGCTGGATGATTGATGAAAAGATGGAGGCGCCGACGAAGAAACGACATAGATGTCAGATCTGTCGTGAGACGGTAGTGCGCAAAGAGTTCTTCAGGCACTACGAAGCTCACATGCAGTTGAAGTCGCAAACGGCGCCCAGTGAGGTGCAAGTGAAGGAAGAGAGAGTGGCGCCGCAAGGAGATAACACAGAATTGTTATCCAACATACTCACTTCAGCTTTGGCGCAACTACGTTCCCCGTACATGCAGAAGACGTGCTCGGTATGTTCCCGAGAGTTCGATCGCAGGAACGACTTGAAGCGACACGTCACGGAGCATCTGTACATGGACGCGCTAAGTAAGAAGAACGCACTGTGTCACTCCATGCTGAGATGTCAAATCTGTTCGGAAGAGTTCCAGCGCGCAGAGCAATACAAATTCCACATGCGCACGGAGCACGGCTACATGCCGGTCTACCGCTGCGACTTGTGCGACAAAACGTTCAGCGATTCCAGCAACTTCGCCAAACATAAGAAGATACACAATATCAGGGTGATGGTTTGTGACACTTGCGGGAAGAAATTCAGCTCGAAACTAACACTGGAGAAACATGTCATTTTGCACATGACCACTGACCCCATCAAGTGTAACGTTTGTAACAAAAAATTCTACTCGATGTCTCAGTTCAAGAAACATTTGAAGAGTTCACACAACCCCAAAAAGTTCCCGTGTCGTTGTCTTACTTGCAACATGACCTTCGGCTCCTTCAAGAAAAAGTGGGACCATCAGTGGCTGGTACACAAGGAGAGGAAGCACGAGGCTGACTGTCCCATATGTGGGCAGGGCTTCAGAGTAAATGGTGCCAACGATGGCTTGCTACCACGAGCTGATGAAGACTGGTCAACCACCTTCAAGTTGATAAAGTCTGTTATCTAA
- Protein Sequence
- MPMTPPVQLSGLQISVEVEEFDESVMSNVGPEHPSYPRNPKKTRQFKSFRIDIENIYKVADHIAMLTSNYADKFLSIEVKNMWGRALLEKHELDKYDEKIQNALNEWSQKTQTSSPLFYQCHICRLAWWYLNPFAEHVRKHKIEELKIYYIDGVDSFIVASRIYMFAPVYIPCGGECFRCGSPFSFHVRQDGEYFGCSGCSQTFKTCDKAVRHKTECTDKAEFHDQKVLKFQCKVCSRLFLSEASVDYHLVLAHQEMHMKLSESNYRCKVCHMTLEKRCMATQHMLTHTNMFRVVYKCVNRRCPPTRLFCDEYSAKIHLLRFHKKKYDRRRNSFEEVLVPELCVTEIETYPMETLGASKDTTEVTDVNNPAESDGNYQKQSDGNNQKQSDGNNQKQSDGNNQKQSDGNNQKQSDGNNQEFETEVDWCVSDYQTERQTTKQENIVIKQELSDSDTEAMDYAEMLSKVFKVSNSDRKKPRSHTKPQELLKRHKTPQNVRTLEPKTYQIKNRLKQQPTKPQNNISPAPQNIVPVVPQIVQTLQPQNDQPIQLQIVQPQINTTHNTESQKSLDIQITSIKSEPIDIDYDNFIDIQEDPITIKQEPVEACFGTFYQEKFQDDSFHTDNSEENECQINIRQLDSGQNSSSDTGTMFGDMQIKSEMLSDDDNEMLVIDSDSDSDTSKLLAVKMEPEEVRKELLECSEVNDIKDLPDTYDEKAIFKTPHDERVHAKIIKEKQIKERKVTEAVKPKNKKGKQLTYDQYGNKIEKLYTCAQCGFVGSHKLYKIHKKSECELPTKSKVSVNVTCTKCNKTFTHMNKYIVHFEKHGYDVLHCPCCNVEMETVKELLTHFFRHVRVNYVNCWMIDEKMEAPTKKRHRCQICRETVVRKEFFRHYEAHMQLKSQTAPSEVQVKEERVAPQGDNTELLSNILTSALAQLRSPYMQKTCSVCSREFDRRNDLKRHVTEHLYMDALSKKNALCHSMLRCQICSEEFQRAEQYKFHMRTEHGYMPVYRCDLCDKTFSDSSNFAKHKKIHNIRVMVCDTCGKKFSSKLTLEKHVILHMTTDPIKCNVCNKKFYSMSQFKKHLKSSHNPKKFPCRCLTCNMTFGSFKKKWDHQWLVHKERKHEADCPICGQGFRVNGANDGLLPRADEDWSTTFKLIKSVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -