Ladu014275.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000400.1:362895-385539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.9e-05 0.0027 18.4 2.7 1 23 360 383 360 383 0.97 2 15 0.079 5.6 8.0 5.5 2 23 391 412 390 412 0.96 3 15 5.3 3.7e+02 2.3 4.5 1 23 416 438 416 438 0.97 4 15 0.0015 0.11 13.4 3.5 2 23 444 466 443 466 0.96 5 15 0.0023 0.16 12.9 0.1 1 23 470 493 470 493 0.95 6 15 0.0023 0.16 12.9 0.1 1 23 571 594 571 594 0.95 7 15 0.019 1.4 9.9 0.8 1 23 627 650 627 650 0.96 8 15 0.0023 0.16 12.9 0.1 1 23 654 677 654 677 0.95 9 15 0.0023 0.16 12.9 0.1 1 23 710 733 710 733 0.95 10 15 0.0023 0.16 12.9 0.1 1 23 811 834 811 834 0.95 11 15 0.18 13 6.9 0.2 2 19 884 901 883 904 0.92 12 15 0.005 0.35 11.8 3.2 2 23 941 963 940 963 0.93 13 15 1.2 85 4.3 0.6 3 23 977 1005 975 1005 0.92 14 15 1.2 85 4.3 0.6 3 23 1019 1047 1017 1047 0.92 15 15 0.00035 0.025 15.4 0.3 1 23 1669 1694 1669 1694 0.97
Sequence Information
- Coding Sequence
- ATGTGCGATTTACATATTTGTCGAATATGTCTTAACTCGGCAGTGAGAGGATACAGACTTGAAGAACACAGCCTCCGCCGCTACTATGAATTTTTAACGCAAGAAAAGTTAAATTCTAATGATGGTCTGCCACAATGGGTGTGTTATGAGTGCGGTATGATGCTGCATAAATTCCACAAATTCAAGGAGAAGTGCTTACGGGGACAGCATGTACTGCAGCAGATAAATCTCAGAGGAAAAGTTACTTTTAAATCGGTCGCAATAATTAACAGATTCAGCGAGAAACTGATATCTTCCATAGCCATTGCTACAGTAAGCAAAAGAGTTCAAACTAAATTTATAAAGTACAGTCAAACCATCAAACATACTGAAGTTGAATCCCAAACAAATCTGAATAATAGCTTTGAAACTGTTGCATTAGAGAAAACAAATAATACAGTAAGTGAATCCATTAGCAATAATGTCAAAAATAACACTAATTCTGACGTAATTATCACAAATCTTGTTATAAAAGACACATATGACGGTACAGACAATAATCATTTTAAAGATCATTTTAAAACCAGTGGCTATGAGCAGGCATGTGATGAAAGCAATAAACATAGGAGTATAAATAAAGTATATATCATAGAACCCTCCAATGACCTTATAAAGACTGAAACATCTGATGGTAAAGAAAAAAGTGAAGGGATTAGCAATAAATTTGATAGTAATATTAAAAAGACTATTGATGACACAGAAAAACATGATAGCAATTCAAAAAACACTAGTTACGAGGTACAGATTGATTTTGACATCACTGATAGAGCAACATCTAGTGATGATGAATCTCTCATGGACATTAAAAAGAAAACAGGCAAATTGAAATGTAAAACAGAATCAAGTAACACTAAAACAGAGCCAAAAGTTAAAAGAAAGAAAAGTGAGAAAGACAAAGAAGTTGTACTAAAGAATACACGACCATCCAAGCAGGTTTTGAACCCACAATTTTGGAAGAAGATCAATCTAAGTGAAGAAGAAGCCATTAGAGAATTTAAGAGTAGAGAGTTTAACAATGATTATTACTTGAAAGCTAGATATAAGTGTAAGGATTGCTTTAAAGGTTTCTCGAAGAATGAAATGCTGGAGCGACATTTGAAGCAAAAACATGATGAGTCATGTGGTGACAAAGTGTGTCGCTTCTGTCACATGAGGTTCCGTCTTCAACATCAACTCGTCAAACACATAAAGGATCACCTGATTGTTTACAACTGTCTCATCTGCAAGGTGCAATGTACACGATTATGCAACGCAATGACCCACCAGGAGAGACATATGGGCACTAAGAAGAGTTGCAAATACTGTGAGAAAGAGTTTAGTCACCTGTCTACATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGTGCGGCGTGCGGCGCGTCCTTCGTGTCCGCCGCGGGGCTGCAGCAACACAGGCGGATCAAGCACTACGATAACAGTGACGTGAGTGCACATTGTAAATATGTGTGTGCAGTCACCTGTCTACATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGTGCGGCGTGCGGCGCGTCCTTCGTGTCCGCCGCGGGGCTGCAGCAACACAGGCGGATCAAGCACTACGATAACAGTGACTCACCTGTCTACATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGTGCGGCGTGCGGCGCGTCCTTCGTGTCCGCCGCGGGGCTGCAGCAACACAGGCGGATCAAGCACTACGATAACAGTGACGTGAGTTGCACATTGTATATATGTGTGTGCAGTCACCTGTCTACATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGTGCGGCGTGCGGCGCGTCCTTCGTTCACCTGTCTGCATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGTGCGGCGTGCGGCGCGTCCTTCGTGTCCGCCGCGGGGCTGCAGCAACACAGGCGGATCAAGCACTACGATAACAGTGACGTGAGTTGCACATTGTATATATGTGTGTGTAGTCACCTGTCTACATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGTGCGGCGTGCGGCGCGTCCTTCGTGTCCGCCGCGGGGCTGCAGCAACACAGGCGGATCAAGCACTACGATAACAGTGACGTGAGTGCACGTTGTATATATGTGTGTGCAGTCACCTGTCTACATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCATGTGTGTGCGGCGTGCGGCGCGTCCTTCGTGTCCGCCGCGGGGCTGCAGCAACACAGGCGGATCAAGCACTACGATAACAGTGACTCACCTGTCTGCATACTACACGCACGTGCGCATGTCGCACCGCAGCGCGCACGTGTGTGCGGCGTGCGGCGCGTCCTTCGTGTCCGCCGCGGGGCTGCAGCAACACAGGCGGATCAAGCACTACGATAACAGTGACaaGCAGCTAGAAGAAGAGTGTCGCAAGCGACGCGAGGCACCCGACAAGGTGGACGCTACATCTGTGGAGCAAGCCTCAGCTGCAACCACAACGGTTTCGCCGTCGCAGTCAGCTCCCGACGCGGAAGAGATCTACTGCGAGAAATGTGACATCACGTTCATGTCGCGTCGCGCGTACAACATACACTTCTACAAGTCGGATAACCACGACGACGGAGACGCCTTTGCTGTTCTTCATAAAATTCGAAGCAATCACCGATCGCTATCTATTCCGTATTTCAAATCGCGCCCGAAAATCCCGACCTCTTGTGAACACTGCGACAAAGACTTCCCCTCCCGTCAGGCGTACAAGAAGCACCACCAGGCGGAACACAGCCACATACCGCTCTACATACCTGACGAGAGAGACATCTGCGAGATATGCGGCGCTTCTATACAGGTATATTACAAACACTTCCCCTCCCGTCAGGCGTACAAGAAGCACCACCAGGCGGAACACAGCCACATACCGCTCTACATACCTGACGAGAGAGACATCTGCGAGATATGCGGCGCTTCTATACAGGTATATTACAAACACTTCCCCTCCCGTCAGGCGTACAAGAAGCACCACCAGGCGGAACACAGCCACATACCGCTCTACATACCTGACGAGAGAGACATCTGCGAGATATGCGGCGCTTCTATACAGCTCGGCTCGTTCCGTGACTCTTCGCGTGCCTCCTTCGACGGCGGTCGTCGATGCTCGACTCGATTCGTGCGGCAGTCGGCTACCAACGCAGCTCCGGCGCGCGCGCTTACGGATGTAATTCTATTTGAATGCCTCCAGTTATGGAATAAAACTGACTCTGAAGAAGACCATCGTGCTTTTATTTACCGCGCCAGGAATGCTGATCTTATATGGCGCCCAACTAGTGGCCCGATCGATTCGAtcgtgatttacaaggagtgcaccgcgataagcgacgagcacgccctccgtggactccccatgctgctgaccggcgacgccgccgtgtactggcgtggcatcaagtctacagtttcatcatgggaagaagccctgtgtcgactccgcgccatgtacggtacgccgcgccccgcgcacaaagtgttcagagaaatcttcgcagaagagcaaggagacgaagaccgtgccgaacaatttatttcgggagtgcgcgcaaacctatcgcgattgccttatgtagtgccacaagaaatgcaagtcgatatagtgtacggactgcttaaccgcaaaatacgtaagcgagtgccgcgtaacaccgtgttcgacttagaccacctactagagcgagcgaggtacgtggaggaGTCACTGAGCAAAGTAAATCGTCCCGTTGCCAATAGTCCCATACCTATAGTACCTAATGAATCCACAATAGTGATGCACACTGATTTTAGTAATCTGAGTAAAGTTAACCCCTCGAGCGCTAACGGATGTGATATTGCCGTCCCCTCGAGTGCTAGTTTAAATTATTTTACCGCTCCATTGAACGATAAAGCGTATCATGTTGCCGCCCCCTCGAGTCCGGACATAGCCGACTCATGTAATTTTGCCGCCCCGCATATTTTTGCCGCCCCGCGCACGATTGAACGTCCACATAGCGCCGCGAAGAAACGTATTCGACCGCGTTGCTCGTTTTGCCGCCGCTTCGGACACGTCATCGAAGATTGTAGGTCAATCCGTCAACCCGCGCGCGAGGTCGTCACCGACAACTCGGAATCGTTACCACCCGGAAGTGGAAAAAAACAAAATGCTAGTATCGAGTTCCAGAGCGTTGAGGTTTGTTCTCAAAACCAGTCGCGTCCGACCGTACGTATCCAGGTCGCTGGCCGCGAGGGTGTCGCTGTGCTAGATACCGGCGCATCTCATTGCATTGCCAGCCCCGGCCTGTGCGATATACTCACGGCAAGCGGCGCTAAGTTCGCAGAGACGCACTGTGCAGTAGGACTAGCCGACGGAACTCAACGGGTAAGAAATGTGATGGCTTGTGAGACCTCTGTTACACTTCAGGGACGCAGCATACGTACAACATTCTTAGCTTTACCAGGAGCTGACAACAAAGCACTCCTTGGACGAGATTTTATAAAACGCGCTGGCGTCTTACTCAACCTACCGCGCGCAAGTTGGAGTTACAACGACAACCCAGAGCAGGCTTACTCTTTTGTAGACGTCAACTCTAGGGGGAGCCCTGACGTTCTCGGCTCGTTCCGTGACTCTTCGCGTGCCTCCTTCGACGGCGGTCGTCGATGCTCGACTCGATTCGTGCGGCAGTCGGCTACCAACGCAGCTCCGGCGCGCGCGCTTACGGATGTAATTCTATTTGAATGCCTCCAGTTATGGAATAAAACTGACTCTGAAGAAGACCATCGTGCTTTTATTTACCGCGCCAGGAATGCTGATCTTATACACATGGCTAGTAGCATCAGGTACCACATGAAGTCTCACACGGGCGAGCGAGAGTTCACGTGTCCGGCGAGCGAGTGCGGCGTGCGGTTCACTCTGAAGGCGAACATGCAGCGACACTACAACGTCAAGCACCTGGGGATAGTCTACCCCAAGTACATACGGAAGAACCCCGGCAGAAGAAAAAAGAAAACCGAGGAGATTTTGGACAATGATTTTTCGCCATTAGCAAGAACGAGAACTGGATACTTCTTGTAA
- Protein Sequence
- MCDLHICRICLNSAVRGYRLEEHSLRRYYEFLTQEKLNSNDGLPQWVCYECGMMLHKFHKFKEKCLRGQHVLQQINLRGKVTFKSVAIINRFSEKLISSIAIATVSKRVQTKFIKYSQTIKHTEVESQTNLNNSFETVALEKTNNTVSESISNNVKNNTNSDVIITNLVIKDTYDGTDNNHFKDHFKTSGYEQACDESNKHRSINKVYIIEPSNDLIKTETSDGKEKSEGISNKFDSNIKKTIDDTEKHDSNSKNTSYEVQIDFDITDRATSSDDESLMDIKKKTGKLKCKTESSNTKTEPKVKRKKSEKDKEVVLKNTRPSKQVLNPQFWKKINLSEEEAIREFKSREFNNDYYLKARYKCKDCFKGFSKNEMLERHLKQKHDESCGDKVCRFCHMRFRLQHQLVKHIKDHLIVYNCLICKVQCTRLCNAMTHQERHMGTKKSCKYCEKEFSHLSTYYTHVRMSHRSAHVCAACGASFVSAAGLQQHRRIKHYDNSDVSAHCKYVCAVTCLHTTRTCACRTAARTCVRRAARPSCPPRGCSNTGGSSTTITVTHLSTYYTHVRMSHRSAHVCAACGASFVSAAGLQQHRRIKHYDNSDVSCTLYICVCSHLSTYYTHVRMSHRSAHVCAACGASFVHLSAYYTHVRMSHRSAHVCAACGASFVSAAGLQQHRRIKHYDNSDVSCTLYICVCSHLSTYYTHVRMSHRSAHVCAACGASFVSAAGLQQHRRIKHYDNSDVSARCIYVCAVTCLHTTRTCACRTAARMCVRRAARPSCPPRGCSNTGGSSTTITVTHLSAYYTHVRMSHRSAHVCAACGASFVSAAGLQQHRRIKHYDNSDKQLEEECRKRREAPDKVDATSVEQASAATTTVSPSQSAPDAEEIYCEKCDITFMSRRAYNIHFYKSDNHDDGDAFAVLHKIRSNHRSLSIPYFKSRPKIPTSCEHCDKDFPSRQAYKKHHQAEHSHIPLYIPDERDICEICGASIQVYYKHFPSRQAYKKHHQAEHSHIPLYIPDERDICEICGASIQVYYKHFPSRQAYKKHHQAEHSHIPLYIPDERDICEICGASIQLGSFRDSSRASFDGGRRCSTRFVRQSATNAAPARALTDVILFECLQLWNKTDSEEDHRAFIYRARNADLIWRPTSGPIDSIVIYKECTAISDEHALRGLPMLLTGDAAVYWRGIKSTVSSWEEALCRLRAMYGTPRPAHKVFREIFAEEQGDEDRAEQFISGVRANLSRLPYVVPQEMQVDIVYGLLNRKIRKRVPRNTVFDLDHLLERARYVEESLSKVNRPVANSPIPIVPNESTIVMHTDFSNLSKVNPSSANGCDIAVPSSASLNYFTAPLNDKAYHVAAPSSPDIADSCNFAAPHIFAAPRTIERPHSAAKKRIRPRCSFCRRFGHVIEDCRSIRQPAREVVTDNSESLPPGSGKKQNASIEFQSVEVCSQNQSRPTVRIQVAGREGVAVLDTGASHCIASPGLCDILTASGAKFAETHCAVGLADGTQRVRNVMACETSVTLQGRSIRTTFLALPGADNKALLGRDFIKRAGVLLNLPRASWSYNDNPEQAYSFVDVNSRGSPDVLGSFRDSSRASFDGGRRCSTRFVRQSATNAAPARALTDVILFECLQLWNKTDSEEDHRAFIYRARNADLIHMASSIRYHMKSHTGEREFTCPASECGVRFTLKANMQRHYNVKHLGIVYPKYIRKNPGRRKKKTEEILDNDFSPLARTRTGYFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -