Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000501.1:205872-207497[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00082 0.059 14.3 7.6 2 23 224 245 223 246 0.94

2 10 0.0071 0.5 11.3 2.3 1 21 250 270 250 271 0.95

3 10 0.029 2 9.4 0.5 1 23 293 315 293 315 0.97

4 10 0.011 0.77 10.7 0.6 1 23 320 343 320 343 0.94

5 10 0.012 0.88 10.6 4.3 2 23 351 372 350 372 0.97

6 10 1.2e-05 0.00083 20.1 0.8 2 23 382 403 381 403 0.97

7 10 0.074 5.2 8.1 2.3 1 23 409 432 409 432 0.95

8 10 0.00078 0.055 14.3 1.2 1 23 437 459 437 459 0.97

9 10 0.0055 0.39 11.7 0.6 3 23 466 486 466 486 0.99

10 10 0.0016 0.11 13.4 3.1 1 23 491 514 491 514 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00082	0.059	14.3	7.6	2	23	224	245	223	246	0.94
2	10	0.0071	0.5	11.3	2.3	1	21	250	270	250	271	0.95
3	10	0.029	2	9.4	0.5	1	23	293	315	293	315	0.97
4	10	0.011	0.77	10.7	0.6	1	23	320	343	320	343	0.94
5	10	0.012	0.88	10.6	4.3	2	23	351	372	350	372	0.97
6	10	1.2e-05	0.00083	20.1	0.8	2	23	382	403	381	403	0.97
7	10	0.074	5.2	8.1	2.3	1	23	409	432	409	432	0.95
8	10	0.00078	0.055	14.3	1.2	1	23	437	459	437	459	0.97
9	10	0.0055	0.39	11.7	0.6	3	23	466	486	466	486	0.99
10	10	0.0016	0.11	13.4	3.1	1	23	491	514	491	514	0.97

Sequence Information

Coding Sequence: ATGATGAAAGAAGACGAGAAACCCATAATTTGCAGAGTTTGCATCAACGAAGTCGACATCAATACCAAACATTTCAACATATTCGATATTTACGAAGACTTGCTGAATCCAGATCCATCGTTTGGCAAAATTCTGATATTTAATAAGCTGATGTCATGTGCTAATGTTGTAATCGATGAAAGTGATGGTCTACCGGACCGAATTTGCTTCAGCTGTCTTCTGGAACTCGAAGACGCTTTCAACTTTAGGCGGAAATGCGAGAAATCAGATGAGATTCTCAGAACCGCTACGAAAATTTGTCGCGATCCTAGCGAAGGTGAACTTGATAATGATAATAATACAGAATTTGAGAAAGATACAAAAACTATAGACAATAATTTGATAGAACCGAAGTGTAAAGAATCTGTATTGGTTGAGAATAACGAATATGTTAGCCAAGTTGTCCTTACCAATGTCAAGATAGAATGTGATGATGAACTTGAAGAAAACTATGTGTCTGATTACAACATAACATTTGACAGTCCCAATGAAAACAACAAACCAAATTGTGAAGTTTCACATAAAGACTTAAACCGCAATAGTATACAAATTAAGAAAACTAAACCTAAAAGAAAGCAAGCTTATAATAACAATGAATTTAGAGAAAGTAGAGCTATAGATTTAAAATTAGAATGCCACGACTGCGGTAATACATTCAAAAGCAAATGTAAATTACGCGTTCATTGGAAAAAGCATCATAAAATGTTATACACATGTTCTATTTGCAAACTACAGTTTAAGACACATAAAGCTTACGACAGACACCGGAAAATTAAAACCAAAGCCTGCCTCAATTTCACCAAAATACGTGTTGAAGGTGACGGTAAAAATCTACAATATTATTGCAAAGAATGCGATTACGAGTCCACGGTTAGACAAAATACGCTTAACCATTTAATTGTACATAGTATAAAGCAATACGAGTGCGATAAATGTAGTCTCTCGTTCTTACGGTCCACAGCTTTAAGGAATCATAACGAACGTGTTCACAATATATGTTATGGAGAAAAAACATGCCACATCTGTGGTTTATTCTTTATAGGCTACTCAAGGTACAGTCGCCACATGCAACATCATAAAGAGAAAAAACCAGAAGCAAAGGTGCAGTGTGATTTATGTAAAAAGTTTTTCACGAGCAAAGCCTCCTTGACGGTTCACTTAGAAAGACATAGCACAGAAAAAAACTATGCTTGCGATATGTGTCCATCAAAATATAAGACTTATGCCTCACTACACATACACAAAACACGTAAGCATAAGGAAAAACAATACTCTTGCAAGATATGTGGATATAAGTTAGCATTCCGTAGCAAGTTAAGAATACATGAATCTAAGCATAGCATACTCAACGTTGGGTGTAACTTATGTGGTAAATTTCTGGAGAGCGACACACAACTGAAGTTACATATGGCACGCCATAACAATAGACAGCATAAGTGTGAACAATGCAATAGATCGTATTTTGCAAGATCAGAATATTTGAAACATCTGAGGAGCGTGCATAACGTTTATTTATCTCAAGATCCTGAAGAGAAAACAAAGTTTTATAAGAAGAGAGGATGTCCTAGGAAGAGAGAGAAAGATTGA
Protein Sequence: MMKEDEKPIICRVCINEVDINTKHFNIFDIYEDLLNPDPSFGKILIFNKLMSCANVVIDESDGLPDRICFSCLLELEDAFNFRRKCEKSDEILRTATKICRDPSEGELDNDNNTEFEKDTKTIDNNLIEPKCKESVLVENNEYVSQVVLTNVKIECDDELEENYVSDYNITFDSPNENNKPNCEVSHKDLNRNSIQIKKTKPKRKQAYNNNEFRESRAIDLKLECHDCGNTFKSKCKLRVHWKKHHKMLYTCSICKLQFKTHKAYDRHRKIKTKACLNFTKIRVEGDGKNLQYYCKECDYESTVRQNTLNHLIVHSIKQYECDKCSLSFLRSTALRNHNERVHNICYGEKTCHICGLFFIGYSRYSRHMQHHKEKKPEAKVQCDLCKKFFTSKASLTVHLERHSTEKNYACDMCPSKYKTYASLHIHKTRKHKEKQYSCKICGYKLAFRSKLRIHESKHSILNVGCNLCGKFLESDTQLKLHMARHNNRQHKCEQCNRSYFARSEYLKHLRSVHNVYLSQDPEEKTKFYKKRGCPRKREKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -