Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000379.1:32422-58319[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.6 4.7e+02 2.0 0.2 2 23 470 491 469 491 0.87

2 15 0.012 0.82 10.7 0.0 1 23 501 524 501 524 0.96

3 15 0.014 1 10.4 2.3 1 21 585 605 585 606 0.93

4 15 0.013 0.94 10.5 3.8 2 23 640 661 639 661 0.95

5 15 0.27 19 6.4 3.0 1 23 671 694 671 694 0.91

6 15 0.00024 0.017 15.9 0.8 3 23 702 724 701 724 0.95

7 15 0.002 0.14 13.1 0.5 1 23 730 752 730 752 0.95

8 15 0.0082 0.58 11.1 1.8 1 23 758 780 758 780 0.98

9 15 4.1 2.9e+02 2.6 0.2 3 19 792 808 791 811 0.89

10 15 0.7 50 5.0 0.2 1 23 890 912 890 912 0.96

11 15 1.9 1.4e+02 3.6 7.2 1 23 919 941 919 941 0.95

12 15 0.0019 0.13 13.1 1.7 1 23 962 985 962 985 0.95

13 15 0.0014 0.098 13.5 2.9 1 23 992 1015 992 1015 0.97

14 15 0.0033 0.23 12.4 0.1 2 23 1032 1054 1031 1054 0.96

15 15 0.0098 0.69 10.9 0.2 3 23 1081 1102 1079 1102 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.6	4.7e+02	2.0	0.2	2	23	470	491	469	491	0.87
2	15	0.012	0.82	10.7	0.0	1	23	501	524	501	524	0.96
3	15	0.014	1	10.4	2.3	1	21	585	605	585	606	0.93
4	15	0.013	0.94	10.5	3.8	2	23	640	661	639	661	0.95
5	15	0.27	19	6.4	3.0	1	23	671	694	671	694	0.91
6	15	0.00024	0.017	15.9	0.8	3	23	702	724	701	724	0.95
7	15	0.002	0.14	13.1	0.5	1	23	730	752	730	752	0.95
8	15	0.0082	0.58	11.1	1.8	1	23	758	780	758	780	0.98
9	15	4.1	2.9e+02	2.6	0.2	3	19	792	808	791	811	0.89
10	15	0.7	50	5.0	0.2	1	23	890	912	890	912	0.96
11	15	1.9	1.4e+02	3.6	7.2	1	23	919	941	919	941	0.95
12	15	0.0019	0.13	13.1	1.7	1	23	962	985	962	985	0.95
13	15	0.0014	0.098	13.5	2.9	1	23	992	1015	992	1015	0.97
14	15	0.0033	0.23	12.4	0.1	2	23	1032	1054	1031	1054	0.96
15	15	0.0098	0.69	10.9	0.2	3	23	1081	1102	1079	1102	0.95

Sequence Information

Coding Sequence: ATGTCGAATCTGGTAGCCCGGACCAGTACCAAAAACGGAGACGAGTCAGGTGGGCCGGGCGACCCCAGGGCGGCCGATACTACGGCTGCAATGGAGTCGTCCGGATCATCTAAGAAGTGTCTAGGACGCCTATGCAAGGGCGGCGGACCGTTCGGATCCGCCTTAGGTTACGACATCGATCTAGCATCCATAACAAAAGATCAACCGGTGGACCTAAACGAAAACGTTTACCAATTCCTATTGAAACTCGAACGAGAACATCCGGACATGGTTCAGATATTAGATCAAGACGATTTAAAGGAAAACCAAGAATACGTCTTAGACGATGGTACTGAGATCAAAGCTTCTCAAATACATTTTGACAACGAAGACACACCTATAGATTTGACGATAGAAAAACTTCCATTTCTCAAAATAAATGATGATGGAATAGATGACGTCAAAGAAGAAATTGCGTACGAAGATTTTACATACAAAATTACTGCCAGTCCTACTGGCAGTTCAAATACTAGTCCCAAACATACTTTCATCAATGATATACCTTTCAAATTGGTCTGTAACAATACTACAGGTTTCGAAGCACAATTCACAAGGTATCTAGAAGAAAGCACTAAAACTTATGTGACACTGAATAACGCTACTAAGAAGAATAAGTCACCGAAGAGTTTGATAAAAGATAACTTTAACGGTAAGGATGACTTTAAATATACCAGAGAAGAAATTTTAAATATGCTAAAAGATTCTCCTGTAACTGGCATACCTTATGAAGTAAATGAAAAGAAACATGTGAGAAAAACTGATCCTACGAGAATGATACAGAAAAGTACATCCAAAGCAATAGATATAGATGGGCTAGTTATAGGCGATGGAGAAAATAGAAGTTGTTTTACTTGTGGCAACCGTGTGGTAGATAAACTCTACATTTTCGACAAAGAAGATCAAAAAATACACAGATGCTCGCCACAAAAGATACTTTCTACTCAATTGAAAGTCATATGCGAGTTTTGTCTAAACGAAAACTTCCAACCGTCGAGAATGAAGAGTGCCAATCAATTTTTAAACTCAGAAGAATATGTTGTCATAAAAAACAATCAACAATTTATATTTCAAAAAATTAAAAATTTTAGTTTTCGTTCGGAATCAGATAAAGAACCCAAATTGATAAAAAACCAAGATGAGTTTGTTAAAGTGGAAATTGGGTCTGATGGAGAAATAGTTACGAAACCAATAGACAATGATGATGACGTCATCATTATTAATGACGACAGAAAAGATAGTTCCAGTGAAGTAGAGTTAGTTGAAGGCGAACCCGAAATAGATAAAATTATTGATAATTTGGAAGATGCAGATGAGGAAGTTAAGCATTTTTTGGGGAAATACGTGGATGCAAATGATGTTAAAGAATTAAAGTGCAGGTTCTGTGACATGGAGTTCCAATCGACACTGGAAGTGGCTGTGCACGGCGAGACTCACAAGCACCACATGGAGGATGATGTTGTGTACCCTTGCCCTTTGTGTGATTACGGATATTCAGAGTTCAAATGGCTGAGAGGTCACATCAAGGCTGCTCATGAAAAGAAATGTAATGATAGCAAAATTAACATTAAAAATGGTAAGGAGAAGCATCCAGACTACATAATGACTACAGAAGTGAAGCAGGAGTGTTTGAGTAGTGAAGAAGAGATCTGGATCGTACAGAGTGCTGAAGATGGACCGCCGACGACACTGACTCAAGAGAAGGGCAGAAAAGGGCACAAGTGTGATAACTGCAGTAAATTTTTCCCATCTGCTGCTACTTTGGCAACACACAAATGCAGTCGTCGCGGTATGAAGCGGAACTCAGACGAGGGAATACACACTCCTGAAGAAGGCATAGGAGGGCAGTTCAAGAAATCAAAAGATCATTCCGAAATAGTGACGTGTCATGATTGCAACCAATCATTTACTTCAAAAGTTCGTCTGAAGTTTCACATGCAATTCCACACTCGCGGCGGTCCCTCGAGCGGTACATATACGTGCGATCAGTGCGACTTGATCTGCAATACTGAGACGGAATTGTTCGACCACGTGCATTTCCAACACGACAAGAGAAAAAGATGGCTGTGCCCGCAACCGAATTGTGGGAAGACTTTTTTTCTTAGGGCAACTCTTACAAAACACACCCGCACTCACACGGACACGCGTAGATATGTTTGTGTGAAATGTGGGAAAAAGTTCTTTGACAAGCAAACATTGGACGAACACGGCGTCACGCATTTACAGATCAAGCCGTATCAGTGTCACATCTGCCTGAAGCAGCTGACGCGCGTGTCGCGGCTGCGCATGCACGTGCGAGCTCACCGCGAGCGAGCCGCGCCCGCGCGCCTGCCCGCCTGCGCGCACTGCGCACGAGCATTCCGTGACGTCACGCACGCGCAGGAACACGCATCTAAATCAATCGAGTGTATAGAAGCTTTCGCTAAGCATGTAAAGCAAGAAAATGATGAAACGTCCGTTCTACTGTCCCCCTCTAGTGGGCTGGTGAGACACACTGTTCAGCTTATAGAGTCTCCCGAACCTCCGAAACTGATATTGCGACAAGTGACGCCATCTATAGCTGAACCTCTGTTGTCAAAGCTGACAGATGAAGCGCGCGCGATGATTCGCATCGTGGAGATAGACAAGGCTTTCCGGTGCGAGTTTTGTGAGGATGTATTTTACATAGAAGAAGGGCTGAACAAGCATCGTGTTATACACAAGGACGTGAAGAACCCATTTACTTGCCACATCTGTAAAGTGAGCTTTGCTACATACTCAAGGTGTACAACACATAAGACCACTCATGGATTTTACAAGCGCGGAGGAGAAGCGAGGGCGATGCCGGACTTTCCCGTTGTCAAACATTTTCTATGCGAAGAATGCGGGCGGTCTTACCTCCACTGGACGTATCTTCAAGTGCACCGTCGCATGAAGCATCCGAATGACACCTTTCAACATAAGTGTGCACATTGTGACGTCACCTTCCCCAACAGCTGGAGTCTGGCGTATCATCGTAAAAAAATGCACGGGAAGGGCGGACAGAGCGACGCTAGCAAACAAAATAATTATAGGATCCCTTGCCGAGATTGCGATGAGGTTTTGCCAAACAAAAACGCACTCTATAGACATAGGAAAAAGGAGCACAGTGACGAATCGATAGATTATGAAGTCGGGGAAGGTCTTGCCAATAGTGTTGTTGAGAGCGGCACAGGCGCGTGGGCGTGCGGCGTGTGCGCGCGTCGGTTCCGCGCACGAGCCGACCTCAGAGCTCACACGCGCAACAAACATCCACACCGACTCTCTGTTATAGAGATACAAGGCGGGAATCCAAGCTCGGAGGAAGTGATGAACTTGCTGGACGTCAACTGCATCTCGCGAGACAGGGTCGTCGAAATTAACTACGTGACGTTTGCGAAGGGCACTACGAACATAATCCCGAACTGCGCTCGAGCTCTATCATTGCTGAGCAACGTGCCCAAAACTGTAGTTCCGTGCCCGCGACCTACCAGCACCAACATAACCACCATTAGTACGACAGAAGACCACCCGAACCGACGCCCTAGCGTGCTAGCGAGCTTTAGACGACCGACCATCTTGCAACGGACGGAAAACAATTACTCACTGTTGCAGGGTACTTCACAGGTACAACCCGGTCACAATATCTGTGCACCTGAGCTCGTGACGTCATATCGGCGGACTGGATATGGTGTGCTAACCGTACTGTCGCACCGGGGAGTGCGCGGAGAGGTGACAGGGGAAGCGGGAGAGGCGCCGCATTCCAGCGAGGTGCACAGATATTCTGACCGGGTTATACTTTGA
Protein Sequence: MSNLVARTSTKNGDESGGPGDPRAADTTAAMESSGSSKKCLGRLCKGGGPFGSALGYDIDLASITKDQPVDLNENVYQFLLKLEREHPDMVQILDQDDLKENQEYVLDDGTEIKASQIHFDNEDTPIDLTIEKLPFLKINDDGIDDVKEEIAYEDFTYKITASPTGSSNTSPKHTFINDIPFKLVCNNTTGFEAQFTRYLEESTKTYVTLNNATKKNKSPKSLIKDNFNGKDDFKYTREEILNMLKDSPVTGIPYEVNEKKHVRKTDPTRMIQKSTSKAIDIDGLVIGDGENRSCFTCGNRVVDKLYIFDKEDQKIHRCSPQKILSTQLKVICEFCLNENFQPSRMKSANQFLNSEEYVVIKNNQQFIFQKIKNFSFRSESDKEPKLIKNQDEFVKVEIGSDGEIVTKPIDNDDDVIIINDDRKDSSSEVELVEGEPEIDKIIDNLEDADEEVKHFLGKYVDANDVKELKCRFCDMEFQSTLEVAVHGETHKHHMEDDVVYPCPLCDYGYSEFKWLRGHIKAAHEKKCNDSKINIKNGKEKHPDYIMTTEVKQECLSSEEEIWIVQSAEDGPPTTLTQEKGRKGHKCDNCSKFFPSAATLATHKCSRRGMKRNSDEGIHTPEEGIGGQFKKSKDHSEIVTCHDCNQSFTSKVRLKFHMQFHTRGGPSSGTYTCDQCDLICNTETELFDHVHFQHDKRKRWLCPQPNCGKTFFLRATLTKHTRTHTDTRRYVCVKCGKKFFDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHRERAAPARLPACAHCARAFRDVTHAQEHASKSIECIEAFAKHVKQENDETSVLLSPSSGLVRHTVQLIESPEPPKLILRQVTPSIAEPLLSKLTDEARAMIRIVEIDKAFRCEFCEDVFYIEEGLNKHRVIHKDVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRGGEARAMPDFPVVKHFLCEECGRSYLHWTYLQVHRRMKHPNDTFQHKCAHCDVTFPNSWSLAYHRKKMHGKGGQSDASKQNNYRIPCRDCDEVLPNKNALYRHRKKEHSDESIDYEVGEGLANSVVESGTGAWACGVCARRFRARADLRAHTRNKHPHRLSVIEIQGGNPSSEEVMNLLDVNCISRDRVVEINYVTFAKGTTNIIPNCARALSLLSNVPKTVVPCPRPTSTNITTISTTEDHPNRRPSVLASFRRPTILQRTENNYSLLQGTSQVQPGHNICAPELVTSYRRTGYGVLTVLSHRGVRGEVTGEAGEAPHSSEVHRYSDRVIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -