Ladu011235.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000303.1:76519-101051[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00087 0.062 14.2 0.6 2 23 30 52 29 52 0.97 2 14 0.0034 0.24 12.3 1.7 2 23 128 149 127 149 0.95 3 14 8.9 6.3e+02 1.6 0.1 1 10 155 164 155 169 0.85 4 14 0.00079 0.056 14.3 2.0 1 23 447 469 447 469 0.99 5 14 0.063 4.5 8.3 0.8 2 23 477 498 476 498 0.97 6 14 5.9 4.2e+02 2.1 7.5 1 23 502 524 502 524 0.77 7 14 1.5 1.1e+02 4.0 1.2 1 23 531 553 531 553 0.97 8 14 0.0016 0.12 13.3 3.0 1 23 559 581 559 581 0.96 9 14 0.00074 0.052 14.4 4.3 1 20 587 606 587 610 0.94 10 14 0.00068 0.048 14.5 0.6 2 22 616 636 615 640 0.92 11 14 0.065 4.6 8.3 0.3 1 23 648 671 648 671 0.91 12 14 0.015 1.1 10.3 3.4 1 20 677 696 677 700 0.92 13 14 8.8e-07 6.3e-05 23.6 4.1 2 23 708 729 708 729 0.98 14 14 0.17 12 7.0 0.1 6 23 739 757 738 757 0.94
Sequence Information
- Coding Sequence
- ATGAATAATGATTTGGAGCTAATGAAGCCTCCCATTACTACAAAAGTCCCTAGAAGACCTACACCATTAAATAAAAATCAAATAGTGAAGTGCGAAGTCTGCGACGCGGAGTTCCGACAAAAATGGCAGTTGAAGTTCCACATACGAAGAAACCATTTCAACCTCCTCGCTACCATACCTCACGCACACAACAAACAAGTCAACCAAATATGGTTTGAAAAAGTCCTTAACACTGACTTAGTGATGGAGATCAAGAAGACCGGTGCGAGTAGCCTAATAATGAAACCCATACCACTGAACGCCAATGTGAAAATACACAACAACAACAAAAAAATTGATCTCACCGAACAGTATCCGACCGGTAAAAAGAAAATCGACGACACATGTCGAATATGCTTGAAGATATTTAGAAAACAAGATTTAAAGAAGCATATGAACGAGAAACATTATAACGTGACGAAACATGTTTGTAACAATTGTAATGTACCATTTCAGGATACCAACATGAAAGTGTGTGTTATTTGTCAATGGATATTGCGGAAGTTCTCCAAATTCAAACTCCAGTGCTGGACGGCTAATAATTTGCTATGTGGATCTGCCTATGAGGATGCCAAACCTACTGACTTTTTACAAAATCTGGCAACAAGCCATTACTTGATACAAACACCAACAAAAGTATATCAATACACACCTAAAAACCAGCACTACAAGGAAAACAATACACACATGACTGCCACATACACAGACGACAATAAAAGTAAAGATTTTGAAATGTGTAATGTATTTAATACTACAGAGAATGATGAGTACATAAGTGATGATTATACTGATGACTACAAATCTACAGCTTCGGAAAGATTCGAAGAAAATGAATTTGATATGAAAAATGAAAATGTAAGCGACAATGATAATATTGTCTCAGAGGATGAGACGCCTCTGTTTTTATTGCGCAGTAATTATAACAAAATATCAAAAACTAAAAGGATTTTTTTTAAAAAAGATATAGATAAGATAGAAAAAATTCGTGCCTCAGAAGAAATTTCTGTGGAAATCATAAAAGACCTTAACATAAAGCAGGAAAAATCCAACAGCACTAAAGAATTAAAACAGAAAAAACATAAAAACCGTTTCAAAGGTAATGGATTAAATGAGCAAAAAGACGAAATGTATGCAAAAACTGAATCGAAACATGATCAAAATAGCAAAGTTGTAAAAGACGGCTTCTCCAGTCGTATGGTTCAGGAAACTAGTGAATATAAAGTCATAAAGCTGACTAAAGAGCAGGTTCTACAAGAAATGTGTGAGCGTGCCAAGAGCGACGTGTACATCAATTTGCCGTATAAATGTGAACATTGTGTGAAAGGATTCAATTTCCAAGAAGTTTTAGATAAACATATGGAGAAACATTCCAAGGAGAACGGTCCTCTGAAGTGCGAGATGTGCAGCCAGTACTGTCCCAGCGCGGTCTCGCTCCGGGGACACGTCAAGAGTCACACCACTAGATACAAGTGCAAAGTGTGCGGGTGCATCAAGTCGTCCCGGCAACATCTGCTGGAGCACCACGCGCACCACCTCGGCGCGGGACCCACCTACATGTGCGACTCGTGCGCGTTCACTACCAACAAACGCACAGTGATGCAACGTCACGCGCGGTCACACTCGAGCCGCGCGTCTCACGCGTGTCACGAGTGCGGGAAGCTCTGTAAAACTATCGCCTCGCTTCGTGTGCATATCGCCCGACACAACAAATCCTCACGGCACAAATGCTCTCAGTGTGACAAGACGTTCGTATACTATTCTTTACTAAGGAACCACGTACAGTGCGCGCACGAGAAGAAAGACTTGTACTGCGTCGAGTGCGACGTGCATTTCACATCTGCCGATAGTTTGAGAGCACATTTAAAGAAAGCCAAAAGACACAGAGACTTCGTTGATTACAAACACGTGTGTCCGTGTTGCGGCGCGCGCACGTTCTCTGCGTCCTCTCTGGCTGCGCATATGAGCGCGGCGCACGAGGCGGCGCGCGCGCATGCTTGCAAGCATTGCCACAGGCGGTACAGCAGCCGAGACGTGCTCCGCGCGCACGTGTGGCGCTCGCACGCTAAGGGTGACGCGCCGGCCACGTGTCACCACTGCGGGGCTTCTTTCGCCCGGAAGAGCACGCTGTCGGTGCACATGCGCACGCACACAGGCGCGCGGCCGCACGTGTGTGCGTGCGGCGCCGCCTTCGCACAGGCGAGGACATTGCACACACATATGGAGGCCAAACATAAGGATTTGTCTTTACAGAGAGAAGAGCTGCAGCAGTATGAAAACAAGAGCGAAGTATAA
- Protein Sequence
- MNNDLELMKPPITTKVPRRPTPLNKNQIVKCEVCDAEFRQKWQLKFHIRRNHFNLLATIPHAHNKQVNQIWFEKVLNTDLVMEIKKTGASSLIMKPIPLNANVKIHNNNKKIDLTEQYPTGKKKIDDTCRICLKIFRKQDLKKHMNEKHYNVTKHVCNNCNVPFQDTNMKVCVICQWILRKFSKFKLQCWTANNLLCGSAYEDAKPTDFLQNLATSHYLIQTPTKVYQYTPKNQHYKENNTHMTATYTDDNKSKDFEMCNVFNTTENDEYISDDYTDDYKSTASERFEENEFDMKNENVSDNDNIVSEDETPLFLLRSNYNKISKTKRIFFKKDIDKIEKIRASEEISVEIIKDLNIKQEKSNSTKELKQKKHKNRFKGNGLNEQKDEMYAKTESKHDQNSKVVKDGFSSRMVQETSEYKVIKLTKEQVLQEMCERAKSDVYINLPYKCEHCVKGFNFQEVLDKHMEKHSKENGPLKCEMCSQYCPSAVSLRGHVKSHTTRYKCKVCGCIKSSRQHLLEHHAHHLGAGPTYMCDSCAFTTNKRTVMQRHARSHSSRASHACHECGKLCKTIASLRVHIARHNKSSRHKCSQCDKTFVYYSLLRNHVQCAHEKKDLYCVECDVHFTSADSLRAHLKKAKRHRDFVDYKHVCPCCGARTFSASSLAAHMSAAHEAARAHACKHCHRRYSSRDVLRAHVWRSHAKGDAPATCHHCGASFARKSTLSVHMRTHTGARPHVCACGAAFAQARTLHTHMEAKHKDLSLQREELQQYENKSEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -