Ladu004462.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000105.1:1295946-1304280[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.66 47 5.1 0.3 3 23 48 68 46 68 0.96 2 25 3.9 2.8e+02 2.7 0.0 2 23 95 117 94 117 0.92 3 25 0.21 15 6.7 0.3 2 20 139 157 138 160 0.87 4 25 0.0049 0.35 11.8 0.5 2 23 165 186 164 186 0.96 5 25 0.014 0.97 10.4 0.8 3 23 229 249 227 249 0.97 6 25 0.054 3.8 8.5 2.1 1 23 347 370 347 370 0.94 7 25 0.16 11 7.1 0.2 2 17 466 481 465 488 0.76 8 25 0.081 5.8 8.0 4.4 1 23 509 531 509 531 0.97 9 25 1.9 1.3e+02 3.7 1.5 1 19 535 553 535 557 0.79 10 25 0.78 55 4.9 2.1 2 23 567 589 566 589 0.95 11 25 5 3.5e+02 2.4 0.5 1 11 594 604 594 607 0.82 12 25 0.18 13 6.9 0.1 3 23 663 683 661 683 0.97 13 25 0.89 63 4.7 0.1 2 23 710 732 709 732 0.91 14 25 0.0003 0.021 15.6 0.5 1 23 753 775 753 775 0.97 15 25 0.0024 0.17 12.8 0.2 1 23 779 802 779 802 0.96 16 25 0.26 19 6.4 0.1 1 23 843 866 843 866 0.96 17 25 2.4 1.7e+02 3.4 0.2 2 23 890 912 889 912 0.92 18 25 0.0004 0.028 15.2 0.2 1 23 933 955 933 955 0.97 19 25 0.0062 0.44 11.5 0.7 2 23 960 981 959 981 0.93 20 25 0.00021 0.015 16.1 0.7 1 23 988 1011 988 1011 0.98 21 25 0.68 48 5.1 4.2 1 23 1016 1039 1016 1039 0.96 22 25 0.083 5.9 7.9 1.6 1 23 1045 1068 1045 1068 0.96 23 25 3.3 2.3e+02 2.9 1.2 1 12 1074 1085 1074 1087 0.89 24 25 1.1 79 4.4 0.5 1 23 1146 1169 1146 1169 0.91 25 25 0.065 4.6 8.3 0.0 2 23 1192 1214 1191 1214 0.91
Sequence Information
- Coding Sequence
- ATGCAAGCTTTTTGTTTGTTTTTAGAACCTGGAAAATGGAGACCGAGATTGGGAGACTATCGTGATGCGCGAGACAATGCGGCCATAATCTTAGAATGCTCAAATGTGAGCCCCTTCAAATGGCACCGAACTGTTTTCGGATGTCCCAGCTGTAACTTCACATCGTCTGATTTCAGCGGTATTAAGGAACATATGTCAGAGCATCCGCTCAAATCTAACAAATTGGATATAATGAAACACTCTCGACCCGGTGATACGGTCAAAGTTGACGTCTCAGATCTGAGATGTGAGCTTTGTGAAGAAAATGTCAAAGATATACCCACATTGGTGGAACATCTCATACAGATTCACAATAAACCTATAATAAAAAAATATGATTCGGGCGTCATACCATACTTGTTAAATAATGGATTAATTTGTGCAGTTTGCGGTGAAACTTTTGAAAAGTTTGCATCGCTTCACATGCATGGTTTTGATCACTTTTCCAAATCTGTCTGCCCGGATTGTGGTATGCATTTTGCGGCAGACAGATTAAAGAAGCATATGAATAGGATTCACGGAAACACTAGGCAAATTAAACTGGATCGTTTTAAAATAGGTGCATACGATGCCAGACAGAACGCAAGCATCATTCTGGAATATTCCAACGTCTGTCCTTTCAAATGGAGGCGAAACGTATTTGGCTGTGCATACTGTTCCTACACTTGTGCTGATTTTGTAGATTTAAGGAACCATATGAATGGTCACCCGATTAAATCTGACAGGATCAAAATACTGCGTAATTCACGACCAACACACGTCTTTAAAGCCGAAGTAAGCAACCTAAAATGTGACATCTGCCAAGATAACATTCATAATTTATCGATTCTGATGGATCACCTCAAGGACGAACACGACCAACCTATAAAGAAAGAATACGGTGCCGGTATCATACCATATTTTTTGGACGATTGTTTCAAATGCGCTTACAGTCCTTGCGACGAATCGTTCGATTGCTTTATTAAATTAAACACGCACGTATTAACGCACAATGTTAAGTTTACGTGCGCACTGTGCGGCCAAAATTTCTCTTGTAAAGACGGGCTCAGAAATCATACCGTTAGAACTCACGGACAACAGCGAACGATTAAACTAGTATCAAAACACCCAAAATCCAAACCGAATCGCAGCTGGAGGTCCGATTACTACGACGACGCAAGGCATAATGCCGCTATCCTCATACGATTCTCCAGCGCTATACCATTTAAGTGGCACAGAAACGCATTCGGCTGTGCCAACTGTGGTTATACGTCAGCGGACTTTGGTGTCATTAAAAACCACGTTGAAATAGACGGCTGCAGAGGTCTTCGCTATGCACGACCGACAGTCACACTAAAGGCAGAGGTAACTGATCTCAAATGTAAGATTTGCGATCAAAGCTTTAACGATGTAAAGATTTTACTCTACCACTTAGGTGAAACTCATAACAAGCCTATCAAAAAGGAACACGGTCATGGAATCATTCCCTACATGTTGAAAAATGACTATTCATGCTTCGACTGCGGCCTTCGATTCGATCGGTTCACGAAATTAAACTGTCACATGAATCAGCACTACGCTAATTACGTCTGTTCCATATGCGGTGACGTTTTCACCTGCGCTGCTAGACTTAGGCACCACACGTGGCAACACAAAGCTAATCGAGACAAGGCGAAAATAAAATGCTCAGCCTGCGAATCGATTTTCGACACGAGGCACGAGAAACAAAAGCATATGCTCTCTAAGCATGGCTTGTTCCCGCacaaatgtccgtattgcaccgagACGATAACCAATGAGAAATTTGCTTGTTCTGATCCAACTGACGATGCCTTTTTTCTTTTGTTTGTAGAACCTGGCAAACGCAAGCTGAAAATCGGGGAGTATCGCGACGCGCGCGACAATGCCGCCATTATCCTGGAATTTTCCAACGTGTGCCCGTTTAAGTGGCGTAAAAATGTTTTCGGTTGCGCGTACTGCGATTATACATCCCCTGATTTCGGCCCGTTTAAAAATCACATGGCCAGCCATCCGGTGAAGTCGGAAAGGATCGAGTTTCTTCGTAACTCGAGACCTACCGACACGGTCAAAACGGACGTAGTCAATTTGCAATGCGATCTATGCCAGGAAAGCATCAGAGATATACAAACGCTGATGGATCATCTTAGCGACAAACACAATAAGCCCATTGAGAAAAAGTTCGACTCTGGCATTGTGCCTTATTTGTTAGATAATGGTTATAAATGCGCTTATTGCGGCCAATCGTTCGAGCGGTTTATAATGTTAAACACTCACGTGATTCAGCACAAATTGAATTTCGCTTGCTCTCAATGCGGCCAGTACATATCTAGTCCAGAAGGCTTGAGAAAACACATCCTAAGACGACACGTTAAAACTCCAAGAACCAATTTCCGTCCGAAACTTAGTGAATACGACGATGCTAGACACAACGCGGCCATTATTCTAGAATGTTCCAATATTTGTCCGTTCAAATGGCATCGCAACGTGTTCCGATGCGGCTACTGCGATTTTAAATCAGCTGATTTCGGTCCAGTAAGGGCGCACATTAACAGCGATCATCCGAAACGATTAGAAGCTCTCCATTACTCTCGTCCCACTGAAATATTCAAAGCAGATATAACGAATCTCAAATGTGAGTTGTGTGAGCTGACAATACCAGATATGAAAACATTAATTGAACACTTGTGCGATGCGCACAATAAATCTATCAAAAAACATTACGGTGCGGGCATCGTTCCCTTCCGTTTATGCAACGGGTTCACATGCGCCGATTGCGGTGAAACGTTTGATCGTTTCATGAAATTAAATATTCACGTCAACGAACATTACCCTAATTGCATTTGCTCGCAATGTGGCCAAGCTTTTTCCAGCGAAAACAGGCTCCGAGCTCATGCGGAACAGCATAAAAAGAAGATATTGCAGTTCAAATGCGGTTCTTGCGGCGCTGTCTTCAACTCAAGGTCAACCAAACAAAAGCACATGGAAACCGAGCACGACATCCTTCCCCATAAATGTCCTTACTGCAGTGACGCGTTCAAATCTTACGCCCATAGACTGCTACATTTGAATAAATATCACGGCAAAAAGATAGAATTTCCTTGTAGAATGTGTTCAAGTATTTTTAAAACTGCTTCAAAGAGAGCTGATCATATGCGGCATATACATCTGAGAGACAAGCAGTATTCTTGCACCGTTTGTGACTATGTGTGCACAAGCTTAGGAAGAAAATCCGAAGATGTAGTGATAAAAGACGAAGAGCGATCAGATTCAGAGAATAACGCGCGCGTGACAGCTGCTCCATCGGACGGGGCTATTCGTCGAGCGGCATTCCGAGATAACATCACTACTATCCTACAAACCTCCACAGCCTACCCGTTTAAATACAGGAAAGGCACTTACCTCTGCTTTTACTGCAAGATGACGTTCTTAGAACCAGATAAATTACGAGAACACAACGCGACAGACCACGCGGAGGCAAACCAAATTGTGAAGCCGAGAAAGTATGAACCGCTCAAAATGGACTTCTCGAATACCATGTGCAAACTTTGCGGAGTTAGTGTCGAAGATTATGCGACATTAAAAGCTCATTTGACAGCTGAGCATGGGAGAATAATTGACTGCACATGGGGCGATAGTGTTCTTCCATACAAGTTGTGCAAAGGAGCGGCTACAGGAGGTAAGTTGCGGTGTTTTATGGAGACACTACAACTAAGGCGGGCTGCAACGCAATGTCGCAAGACAGCGCCGCCGAGAATGGGGCCGCGGCGTGAGAGGACTGTCGGTATTGAGGCGCGCTGCTCTCCCTACCTTCCGCGGCTTCGACAGAGTCATAACCGTTTGATGGTGTACGTGGTGGGGCCGCAGGACTTTCTGCGGCCGAAGTGGCAGGCGGCGGGGCCACTAATTACCCGTTGCAGGAGGATATCCATGTCTAGACATGGGGTCGTGTGA
- Protein Sequence
- MQAFCLFLEPGKWRPRLGDYRDARDNAAIILECSNVSPFKWHRTVFGCPSCNFTSSDFSGIKEHMSEHPLKSNKLDIMKHSRPGDTVKVDVSDLRCELCEENVKDIPTLVEHLIQIHNKPIIKKYDSGVIPYLLNNGLICAVCGETFEKFASLHMHGFDHFSKSVCPDCGMHFAADRLKKHMNRIHGNTRQIKLDRFKIGAYDARQNASIILEYSNVCPFKWRRNVFGCAYCSYTCADFVDLRNHMNGHPIKSDRIKILRNSRPTHVFKAEVSNLKCDICQDNIHNLSILMDHLKDEHDQPIKKEYGAGIIPYFLDDCFKCAYSPCDESFDCFIKLNTHVLTHNVKFTCALCGQNFSCKDGLRNHTVRTHGQQRTIKLVSKHPKSKPNRSWRSDYYDDARHNAAILIRFSSAIPFKWHRNAFGCANCGYTSADFGVIKNHVEIDGCRGLRYARPTVTLKAEVTDLKCKICDQSFNDVKILLYHLGETHNKPIKKEHGHGIIPYMLKNDYSCFDCGLRFDRFTKLNCHMNQHYANYVCSICGDVFTCAARLRHHTWQHKANRDKAKIKCSACESIFDTRHEKQKHMLSKHGLFPHKCPYCTETITNEKFACSDPTDDAFFLLFVEPGKRKLKIGEYRDARDNAAIILEFSNVCPFKWRKNVFGCAYCDYTSPDFGPFKNHMASHPVKSERIEFLRNSRPTDTVKTDVVNLQCDLCQESIRDIQTLMDHLSDKHNKPIEKKFDSGIVPYLLDNGYKCAYCGQSFERFIMLNTHVIQHKLNFACSQCGQYISSPEGLRKHILRRHVKTPRTNFRPKLSEYDDARHNAAIILECSNICPFKWHRNVFRCGYCDFKSADFGPVRAHINSDHPKRLEALHYSRPTEIFKADITNLKCELCELTIPDMKTLIEHLCDAHNKSIKKHYGAGIVPFRLCNGFTCADCGETFDRFMKLNIHVNEHYPNCICSQCGQAFSSENRLRAHAEQHKKKILQFKCGSCGAVFNSRSTKQKHMETEHDILPHKCPYCSDAFKSYAHRLLHLNKYHGKKIEFPCRMCSSIFKTASKRADHMRHIHLRDKQYSCTVCDYVCTSLGRKSEDVVIKDEERSDSENNARVTAAPSDGAIRRAAFRDNITTILQTSTAYPFKYRKGTYLCFYCKMTFLEPDKLREHNATDHAEANQIVKPRKYEPLKMDFSNTMCKLCGVSVEDYATLKAHLTAEHGRIIDCTWGDSVLPYKLCKGAATGGKLRCFMETLQLRRAATQCRKTAPPRMGPRRERTVGIEARCSPYLPRLRQSHNRLMVYVVGPQDFLRPKWQAAGPLITRCRRISMSRHGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -