Ladu011266.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000303.1:446045-467609[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.12 13.2 3.1 1 23 300 322 300 322 0.99 2 11 0.018 1.3 10.0 3.8 2 23 330 351 329 351 0.96 3 11 0.032 2.3 9.2 0.1 2 23 356 378 355 378 0.84 4 11 0.022 1.6 9.7 2.7 1 23 385 407 385 407 0.97 5 11 3.1e-06 0.00022 21.9 2.8 3 23 413 433 411 433 0.96 6 11 1.6e-05 0.0011 19.6 0.7 1 23 439 461 439 461 0.97 7 11 0.027 1.9 9.5 0.8 2 21 468 487 467 492 0.92 8 11 0.00072 0.051 14.4 0.2 1 23 500 523 500 523 0.96 9 11 0.31 22 6.1 0.4 1 23 529 554 529 554 0.96 10 11 0.00038 0.027 15.3 2.6 1 23 563 585 563 585 0.97 11 11 0.013 0.92 10.5 0.8 1 23 591 614 591 614 0.93
Sequence Information
- Coding Sequence
- ATGGATATTCAGTTAAATGCAAGTCGTCATGCGCTATGCATCGGATGCTTAAGTTCAGGTCGTAGTTTAAGCGTGATAAATGATCAAGAAAGCAAACAGACGTACAGTGACTTAATAAATAATTTCGACATTATTAATTTTACTATTCTGTTATGCTACGAATGCGTGGGACGACTTAAAAGCGCACTGCGCTTCAAGAAGCAAATAAGTCGAGCTCATTACTCTCTGACCCAATTTACAAACAACATCATTCAACCTACCTTATCTAGATTAGCAATAACAAAAACTGAAACATTTGTATGGGAGCCAGACCCTACACTCTCCTTACACCAAGACTCTTTTCCATCAAACTCCTTCAAGGAGGAAGAACAACTAACTGAAAAATATAACACTAATACACATTCAGATAGTAATGTAAGTGATAATGATATTGATTTTGACACTTTAGATCTCGATTCCGATATAAAAGAATCAATAAGACACACAAATTATGTGAAAAGAAAAAGAAACAAAATCAATAGTCCATGTTCACCAAAAAACTTACTGGAAGTTAAACCTGAGAATATTGATATTGTCAATGTGAAACAAGAACCTACAGATGGCAGGTCGGCTGAGGATCTCGATCTCACAGAATTGTCGGAGAAAAACTATGAATTCAACGATTCTGATGATGAACCATTAAAAGCTAAGAAAACTAGGAAGCAAACAATTAAAAAAGAAGTGAAAGAACTGAGACGCGAGCGACCACCGGGCGTGGTGGCCGGCGCTTGGGTGCAGAAGAAATTAACCCAACTGAATGTACCGCCCGGACAGTTAGAGATGGTAGTGCTGAGCTGGGAAGAGGTAGAAATGGAACGTCAGAAAGCTAAGGTCAGTCCTGTGTACACTCGGCACGAGTTCCAGTGCACTTACTGCGTGGTGGGTTTCAACCATCGGTTCAAACTGGACGCGCATATGAAGAAGCATTCGCCGGAGGCTGGTGACTTAGAATGCAGTATATGCAAGTCAAGGTTTAAGACACAAAGTGCATTGCTGTGCCATCGACGGAGACACCGTTCTAGATGGCGGTGTTGTATATGTGGGTTAGTGTTCTCGCGCGCGTCCGTGGCGGCGGACCACGCGTCGCGCGCGCACGGCGCGCCGAGCGCGCGACACGAGTGCCGCGTGTGCGAACATCGCGCCACTTCCCTGGGCAAACTTAGAGTGCATATGAAGAGTCACGCAGAAAGGCAGCACTGTGAACAATGTGGGAAAACGTTCCGGGACAAATCTTCGCTCAGGACGCATCTATATATACATACGAACCAAATGGACTTCTCATGCGAAGTGTGCGGCAAGAAGTTTAGATTCAAGAAAGCTTTAGAGATACACAGCATCACGCACCAGGCTTCACAGTTGCTCTACTGTGCAGACTGTGACATGAATTTTAAGAACCGCCTTTCGTTTTACCAACACATTAACTACTCCATGAAACACATACACCCGGACAAAATAAAATACGCGTGCGAGTTCTGCCCGCGACGGTTCTCTAAACCTGCCCGCTTAGAGGAACATAGACTCAGTATACATTTGAAACTGGCTCCACACAAATGCACCGTTGAGGGATGTACTTTTGCAAGTGCGTCTCGTCCCGCTCTAAGGACCCACAATAGGATGGTGCATAGAAATAAAAGATTGGAGAGGAACCACGTGTGTCATACGTGTGGGAAGGCGTATACGACCAAGAAGATACTAGAAGGTCATATTCGTTCGCACACTGGTGAGAGGCCTTACGTCTGCTTCAAATGTCCGGCGACTTTCAGTCACGACGCAGCGTTATACAATCATAACAAATTAGTACATAAGAATATCTGTGCACCTCGCTGGAATGCGGCGCCTCTCCCGCTTCTCCTGTCACCTCTCCGCGCACTCCCCGGTGCGACAGTACGGTTAGCACACCGTACCCAGACCGCTGATATGACGTCACGAGCTCAGACCCCATTCGTTAGACGTCGCAAGCCGAACCAGCCGTTGACCGAAGAACAGCTGAGCTGGGATGTTAATGTAGTCAATACTGCACCTGCGATACCTACTCAGGTCGACCCTGAACCCTAG
- Protein Sequence
- MDIQLNASRHALCIGCLSSGRSLSVINDQESKQTYSDLINNFDIINFTILLCYECVGRLKSALRFKKQISRAHYSLTQFTNNIIQPTLSRLAITKTETFVWEPDPTLSLHQDSFPSNSFKEEEQLTEKYNTNTHSDSNVSDNDIDFDTLDLDSDIKESIRHTNYVKRKRNKINSPCSPKNLLEVKPENIDIVNVKQEPTDGRSAEDLDLTELSEKNYEFNDSDDEPLKAKKTRKQTIKKEVKELRRERPPGVVAGAWVQKKLTQLNVPPGQLEMVVLSWEEVEMERQKAKVSPVYTRHEFQCTYCVVGFNHRFKLDAHMKKHSPEAGDLECSICKSRFKTQSALLCHRRRHRSRWRCCICGLVFSRASVAADHASRAHGAPSARHECRVCEHRATSLGKLRVHMKSHAERQHCEQCGKTFRDKSSLRTHLYIHTNQMDFSCEVCGKKFRFKKALEIHSITHQASQLLYCADCDMNFKNRLSFYQHINYSMKHIHPDKIKYACEFCPRRFSKPARLEEHRLSIHLKLAPHKCTVEGCTFASASRPALRTHNRMVHRNKRLERNHVCHTCGKAYTTKKILEGHIRSHTGERPYVCFKCPATFSHDAALYNHNKLVHKNICAPRWNAAPLPLLLSPLRALPGATVRLAHRTQTADMTSRAQTPFVRRRKPNQPLTEEQLSWDVNVVNTAPAIPTQVDPEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -