Ladu023268.2
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010001166.1:768136-786407[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.088 6.3 7.9 2.4 1 23 150 173 150 173 0.94 2 12 0.094 6.7 7.8 3.2 1 23 180 202 180 202 0.99 3 12 0.85 60 4.8 0.2 1 23 206 228 206 229 0.92 4 12 0.018 1.2 10.1 2.3 1 23 241 264 241 264 0.97 5 12 1.3e-05 0.00095 19.9 0.3 2 23 269 291 269 291 0.95 6 12 0.0092 0.65 11.0 4.9 1 23 298 320 298 320 0.97 7 12 0.0042 0.3 12.0 7.5 1 23 330 352 330 352 0.96 8 12 0.00092 0.065 14.1 7.0 1 23 369 391 369 391 0.97 9 12 0.015 1.1 10.3 0.1 1 23 402 425 402 425 0.90 10 12 5e-05 0.0035 18.1 1.6 1 23 430 453 430 453 0.92 11 12 4.3e-05 0.003 18.3 0.1 3 23 464 484 463 484 0.98 12 12 0.02 1.4 9.9 2.1 2 23 491 513 490 513 0.92
Sequence Information
- Coding Sequence
- ATGTCCAATCTTGACTTTGAATCAATTTTGTCTTCGCATAATCTAGCTACAGAAGCTGTGTCACGAAATATAATTCCGCATAAATTAAATAAACTGTATCATTCTTTGCAATACTCGGATATCACAATCACTTCTAGTTTGAAAAACGAAATCAAAATAGAAAAATTTAAAAAACATGATTATGTTGACCCAAAGGAAGAACTAACCAATGATGATAATTCATATCAAATGGCCACTGATATAAAAACTGAACCCGACAGCTCAGACTGCGAAAATGATCTACCTTTGTCACAAATGAAAAAGAAAGAGCCTGATAAAGTTACGCATCAGCTTCTGAGTGTTGACAAAATCTATGAAGGAAAAATTGGACTACTTATCATGACTAAGGAACAGTTAATGTTAGAAAGAGAAAAAAGTTCAATGCAAGAGACATACTTAAAACATCCTTACAAATGCAAGAGTTGCATAAAGGGTTTCGACCGTGAGAGTACTTTTAAGTCACATAATGAAAGACAGCATATTAAGAAAATCAATGGTTATCAATGCGATATCTGCAAATCATATCTCTGTTCTGAAGCATCATACAAAGAGCACACCCGAAGGCATCTTATGAGGTATATATGTGTGGCTTGTGGCAAACGGGCGACAGATGTTTACTCCATTGCTGATCACTACAACGAGCATCATGGCAATATTGACGGACACTCCATCAATATACAATATCAATGTGTCAAATGTGATTATTCTACTCGTTCTTACCGAGGATATCGTTATCATCTGGAGCGGCAACATAAGTCAAAACCGGAATGTGACATCTGCAGGAAAACCTATGCCACGTTGAGCAGTCTTAGAAAACATATAGAATCAGTCCATACAAAAAATCCTCCACAGTATAAATGCACGACGTGCAATAAGTCCTACCGCTGCAAGTCAGGGTTGTTCAACCACGAAGAGTCGCACGCGCACGGAGGCAACCCTACCCGCACGCACTTCTGCGTGCAGTGCAAGACACACTATTCCACGAAGAGCAGTCTGACTCAACACTTGAAGAAGCACTCTACTCCTGTCACTGACGAGGACAAGAGAGGCAACCCTACCCGCACACACTACTGCGTGCAGTGCAATACACACTACTCCACGAAGAGCAGTCTGACGCAACACTTGAAGAAGCACTCTACTCCTGTCACTGACGAGGACAAGAGGTTTTCCTGCAACGAATGCGGTCTTAGGTTTTTGACGAAAGCCCTAATCAAAGCTCATATAGTCTGGGAACACTTGAAGATGCGACACGAGTGTCAACAATGCCATAAAGCATTCCGAACCCCAGGAGTATTAAGGAGACACATTGCGTTCGTTCACGAGAAACGGAGACCGCCTCGGAACAAGATTTGCGACTACTGTGGACGAGGGTTTACTACGGCAGCCATATTGGAGAGTCACATCCGCACGCACACGGGCGACCGACCGCTCAAATGTACGCACTGCGCCGCCACCTTCGCACATAAAGCGGCACTCTATACACATAACAAATTACTACATAAATAA
- Protein Sequence
- MSNLDFESILSSHNLATEAVSRNIIPHKLNKLYHSLQYSDITITSSLKNEIKIEKFKKHDYVDPKEELTNDDNSYQMATDIKTEPDSSDCENDLPLSQMKKKEPDKVTHQLLSVDKIYEGKIGLLIMTKEQLMLEREKSSMQETYLKHPYKCKSCIKGFDRESTFKSHNERQHIKKINGYQCDICKSYLCSEASYKEHTRRHLMRYICVACGKRATDVYSIADHYNEHHGNIDGHSINIQYQCVKCDYSTRSYRGYRYHLERQHKSKPECDICRKTYATLSSLRKHIESVHTKNPPQYKCTTCNKSYRCKSGLFNHEESHAHGGNPTRTHFCVQCKTHYSTKSSLTQHLKKHSTPVTDEDKRGNPTRTHYCVQCNTHYSTKSSLTQHLKKHSTPVTDEDKRFSCNECGLRFLTKALIKAHIVWEHLKMRHECQQCHKAFRTPGVLRRHIAFVHEKRRPPRNKICDYCGRGFTTAAILESHIRTHTGDRPLKCTHCAATFAHKAALYTHNKLLHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -