Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000105.1:1306427-1311320[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.73 52 5.0 0.8 1 23 123 145 123 145 0.92

2 14 0.072 5.1 8.1 0.2 2 23 170 192 169 192 0.96

3 14 0.14 9.9 7.2 0.1 1 23 217 239 217 239 0.95

4 14 0.00025 0.017 15.9 0.2 1 23 243 265 243 265 0.98

5 14 0.081 5.7 8.0 1.6 1 23 317 339 317 339 0.98

6 14 0.14 10 7.2 0.2 2 23 367 389 366 389 0.95

7 14 2.2e-05 0.0015 19.2 0.7 3 23 414 434 413 434 0.97

8 14 0.54 38 5.4 2.2 2 23 438 459 437 459 0.95

9 14 0.00028 0.02 15.8 6.6 1 23 464 487 464 487 0.96

10 14 0.25 17 6.5 2.0 2 23 499 521 498 521 0.94

11 14 0.011 0.75 10.8 0.1 1 23 527 550 527 550 0.97

12 14 4.4e-05 0.0031 18.3 0.6 2 23 555 576 554 576 0.96

13 14 0.00016 0.011 16.5 4.0 1 23 582 604 582 604 0.97

14 14 0.0045 0.32 11.9 0.6 1 23 608 631 608 631 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.73	52	5.0	0.8	1	23	123	145	123	145	0.92
2	14	0.072	5.1	8.1	0.2	2	23	170	192	169	192	0.96
3	14	0.14	9.9	7.2	0.1	1	23	217	239	217	239	0.95
4	14	0.00025	0.017	15.9	0.2	1	23	243	265	243	265	0.98
5	14	0.081	5.7	8.0	1.6	1	23	317	339	317	339	0.98
6	14	0.14	10	7.2	0.2	2	23	367	389	366	389	0.95
7	14	2.2e-05	0.0015	19.2	0.7	3	23	414	434	413	434	0.97
8	14	0.54	38	5.4	2.2	2	23	438	459	437	459	0.95
9	14	0.00028	0.02	15.8	6.6	1	23	464	487	464	487	0.96
10	14	0.25	17	6.5	2.0	2	23	499	521	498	521	0.94
11	14	0.011	0.75	10.8	0.1	1	23	527	550	527	550	0.97
12	14	4.4e-05	0.0031	18.3	0.6	2	23	555	576	554	576	0.96
13	14	0.00016	0.011	16.5	4.0	1	23	582	604	582	604	0.97
14	14	0.0045	0.32	11.9	0.6	1	23	608	631	608	631	0.95

Sequence Information

Coding Sequence: ATGTCGCCTAAAAATACGTATGTAGGGACCGTCACAACCGGGCAGCCGAACAAACGAATATCGCCGCTATTCCAAGTAGCATACGATCGCAGCCTTTGCAAGCCATTGGGTACCATCAGCGACTTTAGCAAACTAAAGAAGAAGGGGCACTTTGCAACCGAAATAGTTGCAGGCATCGACTCACGAAGCTCTTCCCCAATCGCACTCGCTCGATCGCCATCGCCTCTGCCTTTAGAAGACAAGAACCCACCCGCAAAATTCTTACTAAAACCTGAACCGAAAAAGAACAATACAAACGCCAGACAAAACGCGTTAACAATCTTCGAATTTTCAACAGCATACCCTTTCATCTTTTCAAACAACAAATTCAAATGCTTCGTCTGCGCACAGCCATATCTAGATATGAACCTTCTGAAGCACCATATGATCGAACACGCTTTCACATCCTTACGAAGATTAATGAACAATAGAAAAGAAAACGTTCTAAAAGTCGACGTCAGCGATTTGACTTGCAAACTCTGCTCGATGCCCATAAAAGATTTGGTCACACTAAAACTGCATCTAAAAGTCACACATTCGAAACCAGTGGATACAGAGTTGCAAGATAATCTCATTCCGTTCAATTTAAACTTGTTCAACGCTGAAGGTTATCAATGCGTGATTTGCGAGCAAAACTTCATCAAGCTGCGAATATTAGTCATACACATGAGCGCTCACTTCAGTAATTACAGCTGTGAGATCTGTGGCTCCGGGTTTATGACGTTACGACTGCTAAAGAAGCATTTAGAGGTCCACGAAGCCGGACAAGAAGCCTCAACGAACAATCCTGGACACACTGACCACAGCCCTAGAACTATTCGATGGCATATGACAGCATCAGAAAGAGAAAACGCCGCCCTTTTCTTAGAACTCACAACAGTCGTCCCATTCACCTGGCTTCAGGGAAACTACAAGTGCTTTTACTGCGAAGAATTATTCACAGAAATACACCCACTTTTACAACATACTAAAGTCCACCCAGTCCCCAAACATTCCACTTTATTGGAGAAATACATTAAAATTGGCAAAAGAGTCGTCAAAGTTGACGCAACTAGTCTAAAGTGCAGAGTCTGTGAGCTGAAGTATTCAGAACTAGATGATATTAGGAATCATTTGAGTAGCGTCCACAAAAAAATCTTCAGAAAAGCTGGCAACGGACTCATGGCTTATAAACTTAGTATTGCAAATGGCAATGTAGCTTGTTACAAATGTGGTCTAGAATTTACGTCATTCTTTAATCTAAATAGGCATATGAATGTTCACGACAATGTGGTATGCGATACGTGCGGTCTGGGATTCTTGACTCATCATCGCCTCAGAAACCATACAACCGTCCACCAGATCGGAAGTCACAAATGTAAACATTGCCAGAAAGTATTTCCAACCAAAATAAAACTACGGAACCACACACTCCGATATCACGAAAAAACCAACGTAAAAAAACTAAAACCACAAAAATGTCCACATTGTTTGGAAAGATTCACGGAGTACTACAGAAAGATTTCACATATGAAAGAAGTACATGGGATCACGTTCAAATTCGAATGCGAAGCTTGCAAAGCTGTTTATCCGAATACAAGAGCTTTAAGAGAACACACGAGAAAAGTCCACTTACAGAATATTGTGTGTAAGATTTGCGGAAAATGTTTTGGATCGTTAGTGTCTCTAAAGATTCATTCTAGAGGGCATACTGGGGAACGCAACTTCTTTTGCGCTGTCTGCCAGAAGACCTACATGCACGAGAAGCTGCTAAGACGGCACATGAAGACGCACGGCTATGAACATACTTGCCTGCTATGCGGCAATGGGTTTGCGGACAAAGCTGAACTTGATAAACATAAGAAGCAATGGCACACGGATGAGATAGATTCCAAAGAAACTCATAAAACTGTACCATAA
Protein Sequence: MSPKNTYVGTVTTGQPNKRISPLFQVAYDRSLCKPLGTISDFSKLKKKGHFATEIVAGIDSRSSSPIALARSPSPLPLEDKNPPAKFLLKPEPKKNNTNARQNALTIFEFSTAYPFIFSNNKFKCFVCAQPYLDMNLLKHHMIEHAFTSLRRLMNNRKENVLKVDVSDLTCKLCSMPIKDLVTLKLHLKVTHSKPVDTELQDNLIPFNLNLFNAEGYQCVICEQNFIKLRILVIHMSAHFSNYSCEICGSGFMTLRLLKKHLEVHEAGQEASTNNPGHTDHSPRTIRWHMTASERENAALFLELTTVVPFTWLQGNYKCFYCEELFTEIHPLLQHTKVHPVPKHSTLLEKYIKIGKRVVKVDATSLKCRVCELKYSELDDIRNHLSSVHKKIFRKAGNGLMAYKLSIANGNVACYKCGLEFTSFFNLNRHMNVHDNVVCDTCGLGFLTHHRLRNHTTVHQIGSHKCKHCQKVFPTKIKLRNHTLRYHEKTNVKKLKPQKCPHCLERFTEYYRKISHMKEVHGITFKFECEACKAVYPNTRALREHTRKVHLQNIVCKICGKCFGSLVSLKIHSRGHTGERNFFCAVCQKTYMHEKLLRRHMKTHGYEHTCLLCGNGFADKAELDKHKKQWHTDEIDSKETHKTVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -